SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22341

Length: 1239 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22341

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L7/L12, putative n=1 Tax=Ricinus communis RepID=B9S691_RICCO	-	-	1.0e-33	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	50s ribosomal protein l7	-	-	1.49245e-33	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L7/L12	IPR000206	-	1.49245e-33	69%
Blast2go	Ribosomal protein L7/L12, oligomerisation	IPR008932	-	1.49245e-33	69%
Blast2go	Ribosomal protein L7/L12, C-terminal	IPR013823	-	1.49245e-33	69%
Blast2go	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	IPR014719	-	1.49245e-33	69%
Blast2go	Ribosomal protein L7/L12, chloroplast	IPR015608	-	1.49245e-33	69%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
122	75	25			1.0
125	75			25	1.0
128		20		80	0.999996
167		10		90	0.90298
172	10		90		0.90298
177	90		10		0.90298
199		11	88		0.923564
224	11	88			0.923564
427	83	16			0.994512
450	60			40	1.0
497		85		14	0.993533
681		10		90	0.90298
773	78	21			1.0
775	78	21			1.0
776			21	78	1.0
778	78		21		1.0
779	21			78	1.0
781	78	21			1.0
782	78			21	1.0
785	78	21			1.0
786	78			21	1.0
789		21		78	1.0
791		21	78		1.0
792	7		78	14	0.999974
793	85	14			0.999981
794	14	85			0.999981
895	14	85			0.993533
954		11		88	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain