SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22139

Length: 586 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22139

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Indole-3-acetic acid-amido synthetase GH3.5 n=5 Tax=Arabidopsis RepID=GH35_ARATH	-	-	3.00004e-41	66%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	69%
Blast2go	gh3 family protein	-	-	8.40779e-45	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	8.40779e-45	83%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	8.40779e-45	83%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	8.40779e-45	83%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
39		66		33	0.997452
41	33			66	0.997452
42		66		33	0.997452
43			66	33	0.997452
45			66	33	0.997452
48		66		33	0.997452
49			33	66	0.997452
51	33		66		0.997452
53	33	66			0.997452
54	33			66	0.997452
55	33		66		0.997452
59	66		33		0.997452
62		66		33	0.997452
63	66	33			0.997452
64		33		33	0.997753
74	66		33		0.997452
104	66		33		0.997452
145		33		66	0.997452
151		66		33	0.997452
271	80	20			0.995493
305		81	18		0.999994
308	81		18		0.999994
310		18		81	0.999994
315			18	81	0.999994
318	81			18	0.999994
319		18	81		0.999994
321	81			18	0.999994
322	81	18			0.999994
323	18			81	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain