SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22080

Length: 3178 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22080
CGTCGTGACCTTGGCTGTCACTCAATCGTAAGATGTAAGAAAAGCAATTGCTCTTCCACGTTCCCCCACGGGCACGAGGGCTTATTAAAGCCCTAAGCCAGGAGCTAACAGCTAAGACTCGCTAATAGCAACAGCTCTTCCTGTCCTCGTTAATATGATCACTGTCTTAGATCTCCATTTATCTTCTGTAGTGTCCTGGGGTTTATATTCTTCGATACCCACAATCGTTTCTCTTCTCTAATAAACAGAGAGGGAGCGAGGAAGGAAGAGCGTCCATGGACCCTGAAATGTATTAAAATTCGAAGAATCTGTGCCGATCAGCAGAGATCGCGGCCTCCAATCGCGGGAACCCTTGACAGTACTCAGCGAGCGGAAGGGATTTTACAGCCCTTCCACATCTCAAGGATTTGTTTTTGTGCGAAACGAGATCATTGGAAGGGTTCGAGTTCGATCCTTGTGGATCTGAGGTTGTTAGCTAGATCAAGTCCGAAGGATTTTACAGAGAACAAGGGGTTATTCGTTTCCCCGTGAGAGTGTTTTAGAATCAGGCTGGGAGATTGTTTGCAATGTTGACCAAATTCGAGACCAAGAGTAATAGGGTAAAGGGTCTAAGCTTTCATACAAAGAGGCCATGGATCCTGGCCAGTCTTCACAGTGGGGTTATTCAGTTATGGGATTATCGGATGGGAACACTCATAGACAGATTTGATGAGCATGATGGGCCAGTTCGAGGAGTGCATTTCCACAAGTCTCAGCCGTTGTTTGTGTCCGGAGGGGATGACTATAAGATCAAAGTATGGAACTACAAGATGCGCCGCTGCCTTTTTACACTACTTGGGCATCTTGACTACATCCGGACAGTGCAGTTCCATAATGAGTATCCTTGGATTGTCAGTGCAAGTGATGATCAAACAATAAGGATCTGGAACTGGCAATCTCGAACTTGTATATCTGTTCTTACTGGTCACAATCATTATGTAATGTGTGCTTCTTTTCACCCTAAGGAGGATTTGGTTGTTTCAGCCTCCTTGGATCAAACTGTACGTGTATGGGACATTGGTGCTTTGAGGAAGAAAACTGTCTCACCTGCTGATGACATTTTAAGGTTAACACAAATGAACACAGATCTCTTTGGAGGAGGTGATGCCGTTGTCAAATATGTTTTGGAAGGTCATGACCGTGGAGTGAACTGGGCTTCTTTTCATCCCAGCTTGCCATTGATTGTGTCAGGAGCAGATGATCGCCAAGTGAAGCTTTGGAGGATGAATGATACCAAGGCCTGGGAAGTGGATACTTTAAGAGGGCATATGAACAATGTGTCTTGTGTGATGTTCCATGCACGCCAAGACATTATTGTTTCCAATTCAGAAGACAAAAGTATCCGAGTTTGGGATGTATCCAAGCGTACAGGTGTCCAAACATTTCGTAGAGAGCATGATCGCTTTTGGATCCTTGCAGCACATCCTGATATGAATCTTCTTGCCGCAGGGCATGACAGTGGGATGATTGTTTTCAAGTTAGAAAGAGAAAGACCTGCCTTTGTTGTTTATGAGGGTAACCTATACTACATCAAAGATCGTTTTCTGCGGGCTTATGAATTTGCAACTCAAAAAGACACTCAACTTATACCAATAAGAAGGCCTGGATCCACGGGAATGAATCAAGGACCAAGATCATTGTCTTACAGTCCCTTGGAGAATGCTGTCCTGGTATGTTCAGATGTTGATGGTGGATCATATGAACTTTATCTTGTTCCAAAGGATAGTGTTGGCAGAAGTGATACAACACAGGAAGCAAAGAGAGGACTTGGAGGATCTGCTGTCTTTGTTGCTCGCAATCGATTTGCAGTCCTTGACAAGATTCATAACCAAGTGATGATAAAAAATCTCAGAAATGAGGTGACTAAGAAGTGTAGTCTTCCAGCAACTGTAGATGCAATCTTTTATGCAGGAACGGGAAACCTTCTTTGTAGGTCAGAAGATAGAATAATACTCTTTGATCTGCAACAGAGGATTGTACTTGGGGACCTCCATACTCCATTTGTGAAATACATTGTATGGTCAAATGATATGGAAAATGTAGCCTTGCTGAGCAAACATGCTATCATCATTGCAAGCAAGAAACTCGTACACAGGTGCACTCTACATGAGACTATTCGTGTTAAGAGTGGTGCTTGGGATGACAATGGTGTTTTTATTTATACAACCTTGAATCACATTAAGTATTGCCTTCCGAATGGAGATAGTGGTATCATTAGAACACTTGATGTTCCTGTTTATATAACCAAGGTATCAGGGAATTCTGTCAGTTGCCTGGATCGAGATGGAAAGAATCGTGTCATACAGATTGATGCCACTGAATATGTGTTCAAGCTGGCACTAATAAAAAGAAGTATGACCATGTTATGAGCATGATCAGGAACTCTCAACTTTGTGGACAAGCAATGATTGCTTACCTACAGCAGAAGGGATTCCCGGAAGTGGCTCTTCACTTTGTCAAAGATGAGAAGACACGTTTCAACTTAGCAGTGGAGAGTGGAAATATTGAAATTGCTGTTGCTTCTGCAAAGGAGATAGATGATAAGGATCACTGGTATAGACTAGGAATTGAGGCCCTTCGGCAAGGGAATGCTGGCATTGTTGAATATGCTTACCAGAGAACAAAGAATTTTGAAAGACTTTCATTTTTGTATCTTATTACAGGCAATATGGATAAGTTGTCAAAGATGCTGAGGATTGCAGAAATAAAAAATGATGTGATGGGTCAGTTTCACAATGCCTTGTATATAGGTGATATTCAGGAACGCATCAAGATACTGGAAGAATCTGGGCATTTGCCACTTGCATATGTGACTGCAGCAGTTCATGGGCTTACAGAAATTGCTGAGAGGCTTGCAGCTGAGTTGGGTGACAATCTGCCTACTCTGCCACCTGGAAAGAAGTCATCACTTCTTATGCCACCTCCACCAATTCTACGCAATGGTGACTGGCCATTGTTGCGGGTTACTAAAGGAATTTTTGAGGGTGGGTTGGATAATGTTGGGGGTGCAGTGCATGAGGAAGAGGATGAAGGAGCTGCAGCCAATTGGGGTGAAGATCTTGACATTGCTGAAGTTGAAGGACAAAACGGTGAGGTTGTGGTGGTAGATGATACAGAAGTGAGAGGAGACGATGATGAA

Ace file of the UniGene sp_v1.1_unigene22080

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer alpha subunit, putative (EC:2.7.11.7); K05236 coatomer protein complex, subunit alpha (xenin)	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	93%
Blast2go	transport	GO:0006810	Biological Process	93%
Blast2go	protein binding	GO:0005515	Molecular Function	93%
Blast2go	protein complex	GO:0043234	Cellular Component	93%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Coatomer, WD associated region	IPR006692	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 614 - 314

Fln protein: MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMRRCLFTLLGHLDYIRTVQFHNEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGGDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHARQDIIVSNSEDKSIRVWDVSKRTGVQTFRREHDRFWILAAHPDMNLLAAGHDSGMIVFKLERERPAFVVYEGNLYYIKDRFLRAYEFATQKDTQLIPIRRPGSTGMNQGPRSLSYSPLENAVLVCSDVDGGSYELYLVPKDSVGRSDTTQEAKRGLGGSAVFVARNRFAVLDKIHNQVMIKNLRNEVTKKCSLPATVDAIFYAGTGNLLCRSEDRIILFDLQQRIVLGDLHTPFVKYIVWSNDMENVALLSKHAIIIASKKLVHRCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPVYITKVSGNSVSCLDRDGKNRVIQIDATEYVFKLALIKRSMTML*

Protein Length: 615

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTAAGATGTAAGAAAAGCAATTGCTCTTCCACGTTCCCCCACGGGCACGAGGGCTTATTAAAGCCCTAAGCCAGGAGCTAACAGCTAAGACTCGCTAATAGCAACAGCTCTTCCTGTCCTCGTTAATATGATCACTGTCTTAGATCTCCATTTATCTTCTGTAGTGTCCTGGGGTTTATATTCTTCGATACCCACAATCGTTTCTCTTCTCTAATAAACAGAGAGGGAGCGAGGAAGGAAGAGCGTCCATGGACCCTGAAATGTATTAAAATTCGAAGAATCTGTGCCGATCAGCAGAGATCGCGGCCTCCAATCGCGGGAACCCTTGACAGTACTCAGCGAGCGGAAGGGATTTTACAGCCCTTCCACATCTCAAGGATTTGTTTTTGTGCGAAACGAGATCATTGGAAGGGTTCGAGTTCGATCCTTGTGGATCTGAGGTTGTTAGCTAGATCAAGTCCGAAGGATTTTACAGAGAACAAGGGGTTATTCGTTTCCCCGTGAGAGTGTTTTAGAATCAGGCTGGGAGATTGTTTGCA_-_ATGTTGACCAAATTCGAGACCAAGAGTAATAGGGTAAAGGGTCTAAGCTTTCATACAAAGAGGCCATGGATCCTGGCCAGTCTTCACAGTGGGGTTATTCAGTTATGGGATTATCGGATGGGAACACTCATAGACAGATTTGATGAGCATGATGGGCCAGTTCGAGGAGTGCATTTCCACAAGTCTCAGCCGTTGTTTGTGTCCGGAGGGGATGACTATAAGATCAAAGTATGGAACTACAAGATGCGCCGCTGCCTTTTTACACTACTTGGGCATCTTGACTACATCCGGACAGTGCAGTTCCATAATGAGTATCCTTGGATTGTCAGTGCAAGTGATGATCAAACAATAAGGATCTGGAACTGGCAATCTCGAACTTGTATATCTGTTCTTACTGGTCACAATCATTATGTAATGTGTGCTTCTTTTCACCCTAAGGAGGATTTGGTTGTTTCAGCCTCCTTGGATCAAACTGTACGTGTATGGGACATTGGTGCTTTGAGGAAGAAAACTGTCTCACCTGCTGATGACATTTTAAGGTTAACACAAATGAACACAGATCTCTTTGGAGGAGGTGATGCCGTTGTCAAATATGTTTTGGAAGGTCATGACCGTGGAGTGAACTGGGCTTCTTTTCATCCCAGCTTGCCATTGATTGTGTCAGGAGCAGATGATCGCCAAGTGAAGCTTTGGAGGATGAATGATACCAAGGCCTGGGAAGTGGATACTTTAAGAGGGCATATGAACAATGTGTCTTGTGTGATGTTCCATGCACGCCAAGACATTATTGTTTCCAATTCAGAAGACAAAAGTATCCGAGTTTGGGATGTATCCAAGCGTACAGGTGTCCAAACATTTCGTAGAGAGCATGATCGCTTTTGGATCCTTGCAGCACATCCTGATATGAATCTTCTTGCCGCAGGGCATGACAGTGGGATGATTGTTTTCAAGTTAGAAAGAGAAAGACCTGCCTTTGTTGTTTATGAGGGTAACCTATACTACATCAAAGATCGTTTTCTGCGGGCTTATGAATTTGCAACTCAAAAAGACACTCAACTTATACCAATAAGAAGGCCTGGATCCACGGGAATGAATCAAGGACCAAGATCATTGTCTTACAGTCCCTTGGAGAATGCTGTCCTGGTATGTTCAGATGTTGATGGTGGATCATATGAACTTTATCTTGTTCCAAAGGATAGTGTTGGCAGAAGTGATACAACACAGGAAGCAAAGAGAGGACTTGGAGGATCTGCTGTCTTTGTTGCTCGCAATCGATTTGCAGTCCTTGACAAGATTCATAACCAAGTGATGATAAAAAATCTCAGAAATGAGGTGACTAAGAAGTGTAGTCTTCCAGCAACTGTAGATGCAATCTTTTATGCAGGAACGGGAAACCTTCTTTGTAGGTCAGAAGATAGAATAATACTCTTTGATCTGCAACAGAGGATTGTACTTGGGGACCTCCATACTCCATTTGTGAAATACATTGTATGGTCAAATGATATGGAAAATGTAGCCTTGCTGAGCAAACATGCTATCATCATTGCAAGCAAGAAACTCGTACACAGGTGCACTCTACATGAGACTATTCGTGTTAAGAGTGGTGCTTGGGATGACAATGGTGTTTTTATTTATACAACCTTGAATCACATTAAGTATTGCCTTCCGAATGGAGATAGTGGTATCATTAGAACACTTGATGTTCCTGTTTATATAACCAAGGTATCAGGGAATTCTGTCAGTTGCCTGGATCGAGATGGAAAGAATCGTGTCATACAGATTGATGCCACTGAATATGTGTTCAAGCTGGCACTAATAAAAAGAAGTATGACCATGTTATGAGCATGATCAGGAACTCTCAACTTTGTGGACAAGCAATGATTGCTTACCTACAGCAGAAGGGATTCCCGGAAGTGGCTCTTCACTTTGTCAAAGATGAGAAGACACGTTTCAACTTAGCAGTGGAGAGTGGAAATATTGAAATTGCTGTTGCTTCTGCAAAGGAGATAGATGATAAGGATCACTGGTATAGACTAGGAATTGAGGCCCTTCGGCAAGGGAATGCTGGCATTGTTGAATATGCTTACCAGAGAACAAAGAATTTTGAAAGACTTTCATTTTTGTATCTTATTACAGGCAATATGGATAAGTTGTCAAAGATGCTGAGGATTGCAGAAATAAAAAATGATGTGATGGGTCAGTTTCACAATGCCTTGTATATAGGTGATATTCAGGAACGCATCAAGATACTGGAAGAATCTGGGCATTTGCCACTTGCATATGTGACTGCAGCAGTTCATGGGCTTACAGAAATTGCTGAGAGGCTTGCAGCTGAGTTGGGTGACAATCTGCCTACTCTGCCACCTGGAAAGAAGTCATCACTTCTTATGCCACCTCCACCAATTCTACGCAATGGTGACTGGCCATTGTTGCGGGTTACTAAAGGAATTTTTGAGGGTGGGTTGGATAATGTTGGGGGTGCAGTGCATGAGGAAGAGGATGAAGGAGCTGCAGCCAATTGGGGTGAAGATCTTGACATTGCTGAAGTTGAAGGACAAAACGGTGAGGTTGTGGTGGTAGATGATACAGAAGTGAGAGGAGACGATGATGAA

Fln Alignment:

sp_v1.1_unigene22080___SNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMRRCLFTLLGHLDYIRTVQFHNEYP---WIVSASDDQTIRIWNWQSRTCISVLTGH--NHYVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGGDAVVKYVLEGHDRGVNWASFHPSLPLIVSGA--DDRQVKLW
A9NPC1_______________TNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLID--DENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARN---------------------------IVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
109		80		20	0.995493
110	80		20		0.995493
112		80	20		0.995493
113			20	80	0.995493
187		16		83	0.994512
190	83	16			0.994512
194	16			83	0.994512
198			83	16	0.994512
201		16	83		0.994512
205		16		83	0.994512
227	83		16		0.994512
376		25	75		0.996473
378	75			25	0.996473
379	75	25			0.996473
381			75	25	0.996473
384		25		75	0.996473
385		25		75	0.996473
390	75		25		0.996473
393		75		25	0.996473
394		75	25		0.996473
396		25		75	0.996473
397	25	75			0.996473
399	75			25	0.996473
868		75	25		0.996473
1145		10	90		0.90298
1148		10	90		0.90298
1149	90		10		0.90298
1154		10	90		0.90298
1158			10	90	0.90298
1160	90			10	0.90298
1161	90		10		0.90298
1162	90			10	0.90298
1163		10		90	0.90298
1166		10	90		0.90298
1167	10			90	0.90298
1177			16	83	0.999991
1372	90		10		0.90298
1431	10		90		0.90298
1529	88		11		0.923564
1569	88		11		0.923564
2325	10		90		0.90298
2371	33		66		1.0
2608	46			53	1.0
2639	10		90		0.90298
2689	80		20		0.995493
2697			20	20	0.99255
2699	80			20	0.995493
3036	25		75		0.996473
3135		83		16	0.994512
3177		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain