SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21506

Length: 506 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene21506
ATGGGGGGCGGAACAAATTATTTGAATGCCAGACGTAATCGGCTCGACTCCGCGTATATTCTAGCTGGAAAGCCTCGTTGTTACTCTGGTTCTGTTGAAGATTCAACAATTTCTTCTTCCTCCTCATCATCTGCAAATGCCATTCCCGTCAAGAGAAGGGTTGTTTCAGGCGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCTATCAAGAATTGGGTTTCTTTGCAGGATACTTATGAAACATTCTTTTTCATTGTGGATCTACATGCGATTACTTTATCATATGATGCTGAGCAGTTGTCAAAGTTGACGAGGGATGCAGCAGCCATATATATAGCTTGTGGAATTGATACCTCAAAGGCCTCTGTTTTTGCACAATCACATGTCTCGGCCCATGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCGATTGGGTGGTTGAATAAAATGATACAATTTAAAGAGAAGTCTCGCAAGGCGGTGCGTCTTTA

Ace file of the UniGene sp_v1.1_unigene21506 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aminoacyl-tRNA ligase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]	-	-	78%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	78%
Blast2go	tryptophanyl-trna synthetase	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Tryptophan--tRNA ligase.	EC:6.1.1.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Tryptophan metabolism	00380		0.0	78%
AutoFact	Aminoacyl-tRNA biosynthesis	00970		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	84%
Blast2go	ovule development	GO:0048481	Biological Process	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	84%
Blast2go	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	84%
Blast2go	Tryptophanyl-tRNA synthetase	IPR002306	-	84%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9GYS4

Fln msg: Distance to subject end: 223 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 168 - 403

Fln protein: MGGGTNYLNARRNRLDSAYILAGKPRCYSGSVEDSTISSSSSSSANAIPVKRRVVSGVQPTGSIHLGNYLGAIKNWVSLQDTYETFFFIVDLHAITLSYDAEQLSKLTRDAAAIYIACGIDTSKASVFAQSHVSAHAELTWLLNCVTPIGWLNKMIQFKEKSRKAVRL

Protein Length: 169

Fln nts: _-_ATGGGGGGCGGAACAAATTATTTGAATGCCAGACGTAATCGGCTCGACTCCGCGTATATTCTAGCTGGAAAGCCTCGTTGTTACTCTGGTTCTGTTGAAGATTCAACAATTTCTTCTTCCTCCTCATCATCTGCAAATGCCATTCCCGTCAAGAGAAGGGTTGTTTCAGGCGTGCAACCAACTGGATCAATTCACCTTGGCAACTATCTTGGTGCTATCAAGAATTGGGTTTCTTTGCAGGATACTTATGAAACATTCTTTTTCATTGTGGATCTACATGCGATTACTTTATCATATGATGCTGAGCAGTTGTCAAAGTTGACGAGGGATGCAGCAGCCATATATATAGCTTGTGGAATTGATACCTCAAAGGCCTCTGTTTTTGCACAATCACATGTCTCGGCCCATGCAGAGCTCACATGGTTGCTAAATTGTGTCACACCGATTGGGTGGTTGAATAAAATGATACAATTTAAAGAGAAGTCTCGCAAGGCGGTGCGTCTTTA

Fln Alignment:

sp_v1.1_unigene21506___AIPVKRRVVSGVQPTGSIHLGNYLGAIKNWVSLQDTYETFFFIVDLHAITLSYDAEQLSKLTRDAAAIYIACGIDTSKASVFAQSHVSAHAELTWLLNCVTPIGWLNKMIQFKEKSRKA
B9GYS4_______________SVTVKKRIVSGVQPTGSVHLGNYLGAIKNWIALQNTYETLFFIVDLHAITLPYDTKELSKATRDTAAIYLACGIDASKASVFVQSHVHAHVELMWLLSSATPIGWLNRMIQFKEKSRKA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
156	60			40	1.0
180		60		40	1.0
186		40		60	1.0
187	40		60		1.0
188	40			60	1.0
215	40		60		1.0
251	60		40		1.0
333		75		25	0.996473
384	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain