SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20894

Length: 391 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20894
ACACAGATTGGATGGGTCGTGAAGTTTATAGAGGAGAGCCTGGTGGTCCGGGGCCTTTCTCTTCTCTATATGACCGAGGTGTTAGAGCAGGATCACTTGGCCTAATGTTGAATTCATTAACATTGGGGGCAACTTCTCTAATGATAGAGTACCTGTCCCGAAAGTTGGGCCCTAAGTTATTGTTGGCACTTGCAAACACAATCCTATGCATTTCACTTGCATGTACTGTTCTGATCACCAAAGCAGCAGAAAGTCTTAGCAATGAACCCTCGTCTCCTCCTACGACTCTTAAAATTATGGCTTTGTTAATTTTTACAGTCCTTGGAGCACCTCTTGCGGTGACATATAGTGTTCCATTTGCTTTGACAGCAACTTTTACTTCTTCTGCTGG

Ace file of the UniGene sp_v1.1_unigene20894

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sucrose transport protein, putative	-	-	4.0e-28	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	sucrose transporter	-	-	1.93165e-33	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	1.93165e-33	67%
Blast2go	glucoside transport	GO:0042946	Biological Process	1.93165e-33	67%
Blast2go	sucrose transmembrane transporter activity	GO:0008515	Molecular Function	1.93165e-33	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.93165e-33	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC26

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 129 - 288

Fln protein: TDWMGREVYRGEPGGPGPFSSLYDRGVRAGSLGLMLNSLTLGATSLMIEYLSRKLGPKLLLALANTILCISLACTVLITKAAESLSNEPSSPPTTLKIMALLIFTVLGAPLAVTYSVPFALTATFTSSA

Protein Length: 130

Fln nts: ACACAGATTGGATGGGTCGTGAAGTTTATAGAGGAGAGCCTGGTGGTCCGGGGCCTTTCTCTTCTCTATATGACCGAGGTGTTAGAGCAGGATCACTTGGCCTAATGTTGAATTCATTAACATTGGGGGCAACTTCTCTAATGATAGAGTACCTGTCCCGAAAGTTGGGCCCTAAGTTATTGTTGGCACTTGCAAACACAATCCTATGCATTTCACTTGCATGTACTGTTCTGATCACCAAAGCAGCAGAAAGTCTTAGCAATGAACCCTCGTCTCCTCCTACGACTCTTAAAATTATGGCTTTGTTAATTTTTACAGTCCTTGGAGCACCTCTTGCGGTGACATATAGTGTTCCATTTGCTTTGACAGCAACTTTTACTTCTTCTGCTGG

Fln Alignment:

sp_v1.1_unigene20894___TDWMGREVYRGEPGGPGPFSSLYDRGVRAGSLGLMLNSLTLGATSLMIEYLSRKLGPKLLLALANTILCISLACTVLITKAAESLSNE----PSSPPTTLKIMALLIFTVLGAPLAVTYSVPFALTATFTSSA
D5AC26_______________TDWMGREVYQGDPNAKGTKAAAYHKGVQEGAFGLLLNSIVLGVSSLFIEPLCRWMGSKNIWATSNFIVFVCMASTAVISAYALSEHHRGIQYMIGNVSSVKAASVVLFALLGFPLAITYSVPFSVTAELTADA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
305			25	75	0.996473
306			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain