SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20660

Length: 2221 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20660
CGTCGTGACCTTGGCTGTCACTCATGTTTCTTTGGGAAATATAGTTCCCCCTGTAGGAGTTGGGTTGCATTTGAAACCAGAAGAGTTTTAAATTAGTTTCTCAAGGGTGTTATAATGCCTCAGGCAAAGAGAGAGGAGGGTATAGAGTCAGTCCAAGAGAGTATAATCATTGCTACCACAGAACGTAACAGGAAAGCTCTGGATTTCATCGAGCATGCTACTATTAATGCCGCTGAAGTGCAAGCTGAAGTTCTGTTGGAAATTTTAACTAGAAATGCTTATACAGAATATCTTGAACGCTATCAGCTCACTGGTCGGACTGATAGAAAGTCATTCAAGGAACGCTTGCCTGTGATTACTTACGAAGATCTGCAGCCTGAGATTCTTCGCATAGCCAACGGCGATATGTCTCCCATTCTTTCTGCTCACCCCATCTCTGAATTTCTCACAAGCTCTGGAACATCAGCTGGAGAAAGAAAGATTATGCCCACTATTCACGAAGAATTGAAGCGGAGAACGCTGCTTTACAGCCTTCTAATGCCTGTCATGAACCAATACATGAAAGGGTTGGACAAGGGAAAGGGCATGTACTTCCTCTTCGTCAAATCTGAGACCAGGACTCCCGGTGGCTTGCTCGCCCGCCCTGTCCTCACCAGCTACTACAAGAGTCAGGACTTCATAGAACGGCCTTACGACCCCTACAATGTGTACACCAGCCCCATGGAGGCGATACTGTGTTCAGACTCATATCAAAGCATGTACTGCCAGCTTCTGTGCGGTCTTGCACAGAACCACGAGGTGCTCAGAGTGGGAGCTGTGTTCGCGTCCGGGCTTCTGAGAGCAATACGTTTCCTGGAAGAACACTGGCAGTCGTTGTGCCAAGATATTCGCAGTGGCACAGTAAACGATGAAGAGGTGACGGATCCTTGCCTCAGAGAGAGCGTGATGAAGATACTCCACCCGAATACTCAACTGGCGGACTTGATCCGCACTGAGTGCTCCAAAGAATCATGGCAAGGAATCATCACGCGCCTCTGGCCCAACGCTAGATACTTGGACGTTATTGTTACAGGTGCCATGGCCCAATACATCAAGACTCTGGATTTTTACAGCGGCGGCCTTCCTCAGGTTTGCACCATGTATGCCTCCTCGGAGTGCTATTTCGGCATAAATCTGAAGCCTCTGTGCCAGCCATGGGAGGTTTCCTACACGCTGATGCCGAACATGGCCTTTTTCGAGTTCCTTCCTGTCTACCGTAACAAGAACGAGGATGCAGGACCCGTTACCACGGCTACTGAACAACCGGCAGAGCTAGTCGATCTCGTTGATGTGAAAGTGGGACAAGAATATGAGCTTGTGATTACCACATATTCAGGACTGTACCGTTACAGAGTCGGAGACGTGCTGCGGGTGACGGGGTTCCACAACGCTGCGCCGCAGTTCCAGTTCGTATGCAGGAAGAATGTAATGCTAAGCATCGACGCCGACAAAACAGACGAAGCAGAGCTGCACAACGCGGTTATGAATGCAGTGAAGCACCTGGAGCCTTTGGAGGCTACCCTTGTGGAATACACTAGCTACACCGACACGTCCACCATTCCGGGTCATTACGTTCTTTACTGGGAGCTTCGAACCTCCGCGCTGCCCGTGCCTCCCTCCGTTTTCGAAGATTGCTGCCTGACTGTAGAAGAATCTCTCAACTCCGTCTACAGGCAGTGCAGAGTAGCGGACAAATCCATCGGCCCCTTGGAGATTAAAGTAGTCGAGATGGGCACATTCGACAAGTTGATGGACTACGCCATCAGCCGAGGTTCGTCCATCAATCAATACAAAGCGGCACGATGCGTCAAGTTCGCTCCCATGGTGGATATCCTGAATTCCAGAGTCTCGGCAAGCTATTTCAGCCCCAGGTGTCCCAAATGGACAGCCGGACGAACCCAGTGGGGCGCGTTGCCTCGGTAAAATTTGGCGGAACCTAGCTAAATTGTCGGGCAAAATCTCTATATGTCTCTTTTAATTGCGACGTAGCTTCTTTTAGTTTGCCTCTTTGCAAGTACTTCACAAATCACTGTAACAAGCCCGTGGTCAGCCCTGTTGTTGTCCGCGGGATTTTCTTTCATACAACTTGTTGGGTTAATTAGCTGAGGATTGACAGCTTTGTACATTACATATGTGTTGGAATTTCAAATCTAAACAGTCTACCAAAATCGACGGTTTCGAC

Ace file of the UniGene sp_v1.1_unigene20660

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced GH3 protein n=1 Tax=Pinus pinaster RepID=Q4LAM0_PINPS	-	-	99%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	gh3 family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	82%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GH3 auxin-responsive promoter	IPR004993	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg:

Fln protein: MPQAKREEGIESVQESIIIATTERNRKALDFIEHATINAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR*

Protein Length: 617

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTCTTTGGGAAATATAGTTCCCCCTGTAGGAGTTGGGTTGCATTTGAAACCAGAAGAGTTTTAAATTAGTTTCTCAAGGGTGTTATA_-_ATGCCTCAGGCAAAGAGAGAGGAGGGTATAGAGTCAGTCCAAGAGAGTATAATCATTGCTACCACAGAACGTAACAGGAAAGCTCTGGATTTCATCGAGCATGCTACTATTAATGCCGCTGAAGTGCAAGCTGAAGTTCTGTTGGAAATTTTAACTAGAAATGCTTATACAGAATATCTTGAACGCTATCAGCTCACTGGTCGGACTGATAGAAAGTCATTCAAGGAACGCTTGCCTGTGATTACTTACGAAGATCTGCAGCCTGAGATTCTTCGCATAGCCAACGGCGATATGTCTCCCATTCTTTCTGCTCACCCCATCTCTGAATTTCTCACAAGCTCTGGAACATCAGCTGGAGAAAGAAAGATTATGCCCACTATTCACGAAGAATTGAAGCGGAGAACGCTGCTTTACAGCCTTCTAATGCCTGTCATGAACCAATACATGAAAGGGTTGGACAAGGGAAAGGGCATGTACTTCCTCTTCGTCAAATCTGAGACCAGGACTCCCGGTGGCTTGCTCGCCCGCCCTGTCCTCACCAGCTACTACAAGAGTCAGGACTTCATAGAACGGCCTTACGACCCCTACAATGTGTACACCAGCCCCATGGAGGCGATACTGTGTTCAGACTCATATCAAAGCATGTACTGCCAGCTTCTGTGCGGTCTTGCACAGAACCACGAGGTGCTCAGAGTGGGAGCTGTGTTCGCGTCCGGGCTTCTGAGAGCAATACGTTTCCTGGAAGAACACTGGCAGTCGTTGTGCCAAGATATTCGCAGTGGCACAGTAAACGATGAAGAGGTGACGGATCCTTGCCTCAGAGAGAGCGTGATGAAGATACTCCACCCGAATACTCAACTGGCGGACTTGATCCGCACTGAGTGCTCCAAAGAATCATGGCAAGGAATCATCACGCGCCTCTGGCCCAACGCTAGATACTTGGACGTTATTGTTACAGGTGCCATGGCCCAATACATCAAGACTCTGGATTTTTACAGCGGCGGCCTTCCTCAGGTTTGCACCATGTATGCCTCCTCGGAGTGCTATTTCGGCATAAATCTGAAGCCTCTGTGCCAGCCATGGGAGGTTTCCTACACGCTGATGCCGAACATGGCCTTTTTCGAGTTCCTTCCTGTCTACCGTAACAAGAACGAGGATGCAGGACCCGTTACCACGGCTACTGAACAACCGGCAGAGCTAGTCGATCTCGTTGATGTGAAAGTGGGACAAGAATATGAGCTTGTGATTACCACATATTCAGGACTGTACCGTTACAGAGTCGGAGACGTGCTGCGGGTGACGGGGTTCCACAACGCTGCGCCGCAGTTCCAGTTCGTATGCAGGAAGAATGTAATGCTAAGCATCGACGCCGACAAAACAGACGAAGCAGAGCTGCACAACGCGGTTATGAATGCAGTGAAGCACCTGGAGCCTTTGGAGGCTACCCTTGTGGAATACACTAGCTACACCGACACGTCCACCATTCCGGGTCATTACGTTCTTTACTGGGAGCTTCGAACCTCCGCGCTGCCCGTGCCTCCCTCCGTTTTCGAAGATTGCTGCCTGACTGTAGAAGAATCTCTCAACTCCGTCTACAGGCAGTGCAGAGTAGCGGACAAATCCATCGGCCCCTTGGAGATTAAAGTAGTCGAGATGGGCACATTCGACAAGTTGATGGACTACGCCATCAGCCGAGGTTCGTCCATCAATCAATACAAAGCGGCACGATGCGTCAAGTTCGCTCCCATGGTGGATATCCTGAATTCCAGAGTCTCGGCAAGCTATTTCAGCCCCAGGTGTCCCAAATGGACAGCCGGACGAACCCAGTGGGGCGCGTTGCCTCGGTAA___AATTTGGCGGAACCTAGCTAAATTGTCGGGCAAAATCTCTATATGTCTCTTTTAATTGCGACGTAGCTTCTTTTAGTTTGCCTCTTTGCAAGTACTTCACAAATCACTGTAACAAGCCCGTGGTCAGCCCTGTTGTTGTCCGCGGGATTTTCTTTCATACAACTTGTTGGGTTAATTAGCTGAGGATTGACAGCTTTGTACATTACATATGTGTTGGAATTTCAAATCTAAACAGTCTACCAAAATCGACGGTTTCGAC

Fln Alignment:

sp_v1.1_unigene20660___MPQAKREEGIESVQESIIIATTERNRKALDFIEHATINAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR
Q4LAM0_______________MPQAKREEGIESVQESIIIATTERNRKALDFIEHATIHAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
191	66			33	0.997452
192		33	66		0.997452
194	66			33	0.997452
195	66		33		0.997452
197		33	66		0.997452
204	66	33			0.997452
206			33	66	0.997452
214			66	33	0.997452
1591		75		25	0.996473
1593			25	75	0.996473
1594		75	25		0.996473
1861		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain