SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19982

Length: 1784 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19982

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HDA2; HDA2; histone deacetylase; K11418 histone deacetylase 11 [EC:3.5.1.98]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	class iii rpd3 type histone deacetylase protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Histone deacetylase.	EC:3.5.1.98	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone deacetylase activity	GO:0004407	Molecular Function	0.0	80%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone deacetylase superfamily	IPR000286	-	0.0	80%
Blast2go	Histone deacetylase domain	IPR023801	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7STN3

Fln msg: your sequence is shorter than subject: 342 - 359

Fln protein: MASSTDLEAKGTERIFSSKLYMDVSPSKVPVIYSSSYNISFMGIEKLHPFDSSKWGRVCQFLISEGILDRNRLVEPSEATKDDLLVVHTESYLDSLKSSINIAFIIEVPPVALLPNFIVRKRVLQPFCKQVGGTVLAGKLAKERGWAINVGGGFHHCSKNKGGGFCVYADISLCIQFAFARLGISKVMIIDLDAHQGNGHEMDFAHDGRVYILDMYNTEIYPQDYEARRYIHQRVELLSGASTKEYLERLDKELEVAQNAFEPDLILYNAGTDILNGDPLGRLKVDPDGVIKRDEKVFAFAQQKKVPIVMLTSGGYMKSSARVIANSIINLSSKHLIELNK*

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATGCGATATCCAACGACTGGGCAAACATGGAATTAAGGCGGTGTCAGATAAGCTAGAAGAGAGAGGAGAAGTACACACATGCGATGTCCAACGACTGGGCAAACATAGAATTAAGGCGGTGTCAGATAAGCTAGAAGAGAGAGGAGAAGTACCCACATTTCTTAGCATTTCACTTTCCTGCGCTCTCGAAAGTAATTTTCTGCATCAGAACACCGTATTTGGAGGAAGATTTGGCTCGTTAGGAAAATACGCTATCACCGTATTTGGAGGAAGATTTGGCTCATTAGGAAAATACGCTATCAGGAAACATGTACGCAAGGGTTCGAATCTTGACAGCCAAAGACTGATATCAGCATTCTGGAAGTTGTTGGCTGCTTCCGCAATTAAGAATAATTATTCTGTGCCTTCAATATCTGCG_-_ATGGCGTCGTCTACTGACCTGGAAGCCAAGGGCACGGAGCGGATTTTTTCCAGTAAACTTTACATGGATGTTTCTCCCTCAAAGGTGCCTGTAATCTATTCCTCCTCCTACAACATATCTTTTATGGGAATCGAAAAACTGCATCCCTTTGATTCTTCAAAGTGGGGTCGAGTCTGTCAATTTCTCATTTCAGAAGGCATCCTAGACCGTAACAGACTTGTGGAACCTAGCGAGGCTACTAAAGATGACTTGCTTGTGGTACATACAGAATCTTATTTGGACAGCCTGAAAAGCAGTATAAATATTGCTTTTATTATCGAGGTGCCTCCTGTAGCATTGCTACCTAATTTTATTGTGCGGAAAAGGGTTCTCCAACCTTTTTGTAAGCAGGTGGGAGGGACTGTTCTAGCTGGAAAGCTTGCCAAGGAGAGAGGCTGGGCAATCAACGTAGGAGGAGGTTTTCACCACTGCAGTAAGAACAAAGGGGGTGGTTTTTGTGTGTATGCAGACATTTCTCTTTGTATACAGTTTGCCTTTGCTCGGTTGGGGATCTCCAAAGTGATGATAATTGATCTTGATGCCCATCAGGGAAATGGGCACGAAATGGACTTTGCCCATGATGGGAGGGTCTACATATTGGATATGTATAATACTGAGATATATCCTCAGGATTATGAAGCAAGGAGATACATTCATCAAAGAGTGGAATTATTGAGTGGTGCTTCAACTAAGGAGTACTTGGAACGCCTGGATAAAGAACTTGAGGTTGCTCAGAATGCATTTGAACCAGATTTGATTTTATACAATGCAGGGACTGATATTCTTAATGGTGATCCATTAGGTAGGCTAAAGGTTGACCCGGATGGAGTAATTAAGCGTGATGAGAAGGTTTTTGCATTTGCTCAGCAAAAGAAAGTTCCTATTGTTATGCTGACTTCAGGTGGATACATGAAAAGTAGTGCTCGGGTTATTGCGAATTCAATCATAAATCTTTCTAGCAAACATTTGATTGAGTTAAACAAATAG___AGAGCATGCTTGTTCTCAAGCTGTTTTCTCTCCTGAACAGAGTCATTGTATAGCTAACACCTGAGAACAGTTTATATTACCCCTTTCTAGAAGGATAACGTTGTACCTGACAATTGAAAGTAAAAAGCTATTTTGTTTTGTTATTGTTTGTGTTATTTTTCTTACCATAATAAATGGCTTGCATGTTGGTAATTTTCTTTAGTGAAACTTTTCAAAGTTGAAATTTATAATATGGACAATGCGATAAGCAGGCAGTTGCTGTCTGTAATAACGACATACAGATTCTAGATATGTCAAAGTTGTTATGCTTGCA

Fln Alignment:

sp_v1.1_unigene19982___SISAMASSTDLEAKGTERIFSSKLYMDVSPSKVPVIYSSSYNISFMGIEKLHPFDSSKWGRVCQFLISEGILDRNRLVEPSEATKDDLLVVHTESYLDSLKSSINIAFIIEVPPVALLPNFIVRKRVLQPFCKQVGGTVLAGKLAKERGWAINVGGGFHHCSKNKGGGFCVYADISLCIQFAFARLGISKVMIIDLDAHQGNGHEMDFAHDGRVYILDMYNTEIYPQDYEARRYIHQRVELLSGASTKEYLERLDKELEVAQNAFEPDLILYNAGTDILNGDPLGRLKVDPDGVIKRDEKVFAFAQQKKVPIVMLTSGGYMKSSARVIANSIINLSSKHLIE
D7STN3_______________SVSSSTSASDAETLRRGRILSSKLYFDVPLTKVPIIYSSSYDIAFLGMEKLHPFDSSKWGRICRFLILDGALEKNHIVEPLEASKDDLLVVHSESYLNSLKTSLNVAVIIEVPPVALLPNCLVQQKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAGKGGGFCAYADISLCIHYAFIRLNISRVMIIDLDAHQGNGHELDFSNDRRVYILDMYNPGIYPSDFEARRYIDQKVEVVSGTTTNEYLTKLDEALKVAGRMFDPELVVYNAGTDILDGDPLGRLKISPEGVTSRDEKVFRFAREKKIPLIMLTSGGYMKSSAKVIADSIVNLSRKCLID

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
224	25			75	0.996473
226			25	75	0.996473
227			25	75	0.996473
228		75	25		0.996473
229			25	75	0.996473
299	25	75			0.996473
311	25		75		0.996473
444		66	33		0.997452
556		25		75	0.996473
565	25			75	0.996473
594		50	50		1.0
746	12			87	0.992554
895	16		83		0.999991
909		16		75	0.99999
962		87		12	0.992554
969		12		87	0.992554
1033		87	12		0.992554
1034	87		12		0.992554
1064	88		11		0.923564
1066		11	88		0.923564
1067	88		11		0.923564
1070	11		88		0.923564
1071		11	88		0.923564
1072	88	11			0.923564
1073			88	11	0.923564
1074			88	11	0.923564
1076			11	88	0.923564
1079	88			11	0.923564
1082		11		88	0.923564
1083	77		11	11	0.968132
1087		11	88		0.923564
1130	23	5	70		1.0
1292			71	28	1.0
1348			75	25	1.0
1450	54		45		1.0
1572	75		25		1.0
1600	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain