SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19964

Length: 1844 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19964

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	2.0e-14	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	fertilization-independent endosperm protein	-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	0.0	89%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	89%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	89%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	89%
Blast2go	WD40-repeat-containing domain	IPR017986	-	89%
Blast2go	WD40 repeat, conserved site	IPR019775	-	89%
Blast2go	WD40 repeat, subgroup	IPR019781	-	89%
Blast2go	WD40 repeat 2	IPR019782	-	89%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP5

Fln msg:

Fln protein: MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ*

Protein Length: 371

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAGTGTCCGAGCGAAGGAGATTGCTCTAATATGAGCCAGCTCAACTCGACGCTCTAAACTAACGTCTAACTGAACGAAGTGTTTGGCGCTGGTGTCGCCTTATAAATAGTGCCGCTTGTATCAGTGCGTATTACATCAGTGTAGTGAACACTTTGAAAGGTGAGTTTGGGCTTCGACTCTCTACCCTGTGAACAAGTTCAGCTTAAACGCTGTTGCAGTAAAAGGTGTTGAAG_-_ATGGCAAGGAAGGGTTTGGGTACTGATGCGGCAGTAGGCTCATTAATGTCATCAAAGAAGAGGAAAGAGTATAAAGTCACCAATAGGTTTCAAGAGGGCAAGCGGCCTCTTTATGCCATTGCTTTCAATTTCATTGATGCTCGCTATCATAATATTTTCGCAACAGCAGGAGGAAGCCGGGTGACCATTTACCAATGCTTGGAAGGAGGTGCTATTTCTGTTTTGCAGGCATATGTTGATGATGATAAGGATGAATCATTTTACACATTAAGTTGGGCATGCGATGTGAATGGTTCACCATTATTAGTTGCTGGTGGTCACAATGGTATAATTCGAGTGCTTGATGTTGCAAATGAAAAGGTCCATAAGAGTTTCGTTGGCCATGGAGATTCTGTGAATGAAATAAGGACCCAAGCACTGAAACCTTCCCTTATTTTATCTGCTAGCAAAGATGAATCTGTACGACTCTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGGGGACATCGCAATGAAGTTCTCAGTGTAGATTTTCATCCTTCAGATGTATATCGTATTGCAAGCTGTGGCATGGACAACACGGTCAAGATCTGGTCTATGAAAGAGTTTTGGACCTATGTTGAGAAGTCATTTACCTGGACCGATTTGCCATCGAAATTCCCCACGAAGTACGTGCAATTTCCTGTTTTTATTGCTGCAGTGCATTCAAACTATGTGGATTGCACTAGATGGCTTGGCAACTTCATCCTATCAAAGAGTGTGGACAATGAAGTAGTTTTGTGGGAGCCTTACAGCAAGGAGCAAAGTACCAGTGATGGAGTTGTGGACATCCTGCAGAAGTATCCAGTGCCAGAATGTGACATTTGGTTTATCAAGTTTTCATGCGATTTCCACTTTAATTCTATGGCAGTTGGCAACAGGGAAGGAAAAGTTTATGTTTGGGAATTACAGTCAAGCCCTCCTAATTTAATTGCCAGGTTATCACATGCACATTGCAAACATCCTATTAGACAGACAGCTATATCTCATGACGGAAGTACCATTCTCTGCTGCTGTGACGATGGTAGTATGTGGCGCTGGGACGTGGTTCAGTAA___AATCAGCAATTTCCTGGCTGAATGTGCATTCGTATGTTTCAGATATTTACACCTGCACACTAATGGCTTTGATTGTTATTAGCTTCTGGTTGATGTTGTGGAAAATTTTGTCTTTAGCCAAACATTTTGTTTTGCCAGAATAGTCAACAGAGTTTTCTGTTTGCTAGAATACAGCATGCCCATTTTTATAAAGCTACACTTTGCGGGACATTTGAAATTAGTATGCTCCCCAGGGCCTTGTGTTCATAAAGATGCCTTCAATGATTCAGTTGTTATTATCATTTTTAATGGAGGCAATAGTCTATTCACATCAGATAGTTGATGGCCACATGAGTTGTTTATACAAGTCGTTGTTTTATGAGAGAACCTTCTTCAGATGAATTAAAGGTATCAATATATGTATCATGTGGTGATAAGCACATGGAAAATATAACTATCTCAGTAATTTGAAAAACCTAGGATGTTGTTCTAGG

Fln Alignment:

sp_v1.1_unigene19964___MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ
A9NWP5_______________MARKGLGTDAAIGSIVSSKKKKEYRVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGNRVTIYQCLEGGVISVLQAYVDEDKEESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSELYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPDCDIWFIKFSCDFHYNSMAVGNREGKVYVWELQSSPPNLIARLQHAQCKSPIRQTAISHDGSTILCCCDDGSMWRWDVVQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
446			90	10	0.90298
447	90	10			0.90298
448		90	10		0.90298
451			10	90	0.90298
453			10	90	0.90298
455		90		10	0.90298
456		90	10		0.90298
459			10	90	0.90298
462		10		90	0.90298
544			80	20	0.995493
547	80	20			0.995493
548	25			75	0.996473
553	75		25		0.996473
556	25		75		0.996473
557		33		66	0.997452
558	33			66	0.997452
559		66	33		0.997452
560	66		33		0.997452
1337		91		8	0.999807
1364		5	94		0.998397
1367	5			94	0.998397
1369	94	5			0.998397
1370		2	92	5	0.992495
1372	91		5		0.993509
1373	91	8			1.0
1374	94			5	0.998397
1375	94		5		0.998397
1480		2	5	92	0.991359
1481		5	2	92	0.991359
1797	10		90		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain