SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19880

Length: 2928 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19880
CGTCGTGACCTTGGCTGTCACTCATTCTTTGTTTTTATCATCACCCCCTTCCTTCTCCTCCATAATAATAACGCCCCATGAACTACAACACTGAACAGAACAGAGCACTCCCTTTTCAACAATTTGTATTTGCTGCTGTTGTTAATCATTGGATTGCAATATAGAATTTTTCAGAGCCTTTGCCAGATCTCTGAGATAAAGATGCAGTGGAGGAGAAATAAATAGATAGGTAGCCACTGCAGATCTCGAGGGGGAAAGATGCGACAGAGTAAGTAGTGTGCGTGTTTTGTCTGGAAATTGATTTGATTGGATTGAGTAAGAAAAGGGGAATTGCAGACTGAAGGTCCGATTAATTTCCATGCGCGCGGATCATGTTGAGGAAAATGGAATCCGGCGAAGTCGAGAAGGGTTTGGATCCGCAACTCTGGCATGCCTGTGCAGGGGGGATGGTGCAGATGCCTGCAATAAATTCAAAGGTTTATTATTACCCCCAGGGCCATGCAGAGCACGCTGCCACTGTGCCTGATTTCGTGGGCAATCTGCGCATGAGCCCGTCGATCTTGTGCAGAGTGGTGTCGGTGAAGTTCTTGGCCGACACAGAGACCGACGAGGTGTATGCTCGCATGCGCCTCGTCCCCATCTCCGACGACGAGCAGAACAGCAGCGTCGAGGATTCCGAGGCCGAGTCGCGGCCTCCGTCGCCGGCTGTCAATTCTCAGACTGAGACCGCGAATAACAATCACCCGCCGGCTTCTTTCGCCAAGACACTGACGCAGAGCGACGCGAACAACGGAGGCGGGTTCTCGGTGCCCAGATACTGTGCCGAGACCATTTCCCCCGCCTTGATTACTCCAGCGATCCGCCGGTGCAGACCGTTTTGGCCAAGGATGTCCATGGGGAAGTCTGGAAATTCAGGCATATTTACAGAGGAACCCCTCGCCGTCACTTGCTGACCACCGGGTGGAGCACATTCGTCAACCAGAAGAAACTCGTTGCTGGTGATGCAATCGTTTTCCTGCGCAGTGTCACTGGGGAGCTCTGCGTGGGCGTGCGCAGATCCACCAGAAGTACAACTGAATGCCTTTCTCATTCCCATTCCCATTCCCATGGCTCCTCTGCATGGCATTTGCCTGTTAGCGGCATCACCGCCAGTCCTGCTCCTCCTCACAGGGCCTCCAGATGGGAGGTCAAGGCCGCTGACTATTTCTCCGGCATTGCCACCGCCAATTCCAATGGGGCCACTGGCTTTTCTAGAAATAGAGGCAGAGTTAGCGCCAAATCTGTAATCGAGGCTTGTGCTCTGGCGGTCTCTGGACAGCCCTTTGAGGTCGTCTATTATCCCCGTGCTAGTACTCCTGAGTTCTGCGTTAAAGCCAAGTCTGTGGATGCTGCGCTCAGGATTCAATGGAGTCCCGGGATGCGGTTTAAGATGCCCTTCGAGACCGAGGACTCTTCAAGGATCAGCTGGCTTATGGGTACCGTTTCTTTCGTACAGTTTGCAGACCCGGTGCTTTGGCCTAATTCGCCTTGGCGCCTTCTTCAGGTAACATGGGATGAGCCAGATATGTTACAAAATGTGAAAAGAGTCAGCACATGGGCGGTCAAGTCGGGACCCAAGATGCCACTCAATTCAAATGACTCCTTTCCCTTTACCAAAGAAGAAGCTAAGGGTTACTCACTCTCCAGATTTCCAGCTTGAAGGGCAAGGAATCATGGGGCTTCAGATGAGTACAGTTAGCAATAACCTGCTAAGGCCAATTAAACCTTGGCATGGTTTTTCAGACAGTGTTCCTGTGAGCATCCAGGGAGCCAGGCATGATCGCATTTATGGGATCTCTCTATCAGAATTTTTTAGTAACAAAGGTCAAAATGGGTTGTTCTTCAAGCATCCATCTCACCAAGAGCAGGGGGTTATATCGAACCGTGTCTCCACAGATCTTAACATAGGAAATTCTCCACGGAATGATGGCTCTGGTATGCAGAGTAGCCCTTCTTCATTCTTGACAGCAGGAAATTCATCACAAAATGAACAGAAAACAAGTAGTGGATCGGGTAGTAGCTCAACCACAAAAGGCTCATCCTTTCTGCTGTTTGGAAAGCCAATACACGCAGCACCGTCTCCTAAATCTTACAATCAACAGCAATCCGGATTGAGCTCCTCAGATGGGGCAGCTTTTCACACGTTTACTGAGAATGGTTCACCAGGGCTAACCAGTAACACCTCAAGTAATGGAAATCAAGAAGCTTTAGAAAGGGTGCAAAAATTGATCACAGGCGGGAGAGATGGGACCAAATTATCTGAAAATTATGAGTTACGACTTTCCAATGGGGAGAGCCTGGATTTTGCAGGAACCAAGGGTATCAGAAGTCTTCAATGGTTTAAGGATCAGACTTCGACTCTAAAGCTGGAGAAGGATAAACTAGAAAATACATTTGAAGACAGCATCGTTCATTGTAAAGTATTCAAAGAGACTGAAGAAGTTGGTCGAACTCTCGACCTTTCGTTGTTTTGTACATATGAGCAGCTCTATGACAGGCTGGCAAAGATGTTTGGTATTGAGGAATCAGAGTTGTCAAATCGTGTCCTCTACAAAGGTTTGGGCGGATCTGTGAGGCATGCTGGAGATGAACCATACAAGGATTTCATGAAGACTGTGAGGAGGCTTACAATTTTATCCGACTCTGGAAGTGACAACATGGCAAGATAAGACTGTTCTGTGCTATATTTCATTCGGGATTCTTCAAGTACCATGTTGTTGGCTTCATTTTCCAAGGTTTATCTGACTTAGCCACATAATTGAATGGTACTAGCTAGAATCATATTATATTGAACAGTGGATTATATAATGCAATAAAGCTAAGATCTGCAAAATTTCTGAAACATTGGCTCACTTATAACATTCTTATTATATAAGCTCTTTAGATACC

Ace file of the UniGene sp_v1.1_unigene19880

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9S0L2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	auxin response	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	70%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	70%
Blast2go	binding	GO:0005488	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	70%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A843

Fln msg: your sequence is longer than subject: 358 - 264

Fln protein: MTPFPLPKKKLRVTHSPDFQLEGQGIMGLQMSTVSNNLLRPIKPWHGFSDSVPVSIQGARHDRIYGISLSEFFSNKGQNGLFFKHPSHQEQGVISNRVSTDLNIGNSPRNDGSGMQSSPSSFLTAGNSSQNEQKTSSGSGSSSTTKGSSFLLFGKPIHAAPSPKSYNQQQSGLSSSDGAAFHTFTENGSPGLTSNTSSNGNQEALERVQKLITGGRDGTKLSENYELRLSNGESLDFAGTKGIRSLQWFKDQTSTLKLEKDKLENTFEDSIVHCKVFKETEEVGRTLDLSLFCTYEQLYDRLAKMFGIEESELSNRVLYKGLGGSVRHAGDEPYKDFMKTVRRLTILSDSGSDNMAR*

Protein Length: 359

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTGTTTTTATCATCACCCCCTTCCTTCTCCTCCATAATAATAACGCCCCATGAACTACAACACTGAACAGAACAGAGCACTCCCTTTTCAACAATTTGTATTTGCTGCTGTTGTTAATCATTGGATTGCAATATAGAATTTTTCAGAGCCTTTGCCAGATCTCTGAGATAAAGATGCAGTGGAGGAGAAATAAATAGATAGGTAGCCACTGCAGATCTCGAGGGGGAAAGATGCGACAGAGTAAGTAGTGTGCGTGTTTTGTCTGGAAATTGATTTGATTGGATTGAGTAAGAAAAGGGGAATTGCAGACTGAAGGTCCGATTAATTTCCATGCGCGCGGATCATGTTGAGGAAAATGGAATCCGGCGAAGTCGAGAAGGGTTTGGATCCGCAACTCTGGCATGCCTGTGCAGGGGGGATGGTGCAGATGCCTGCAATAAATTCAAAGGTTTATTATTACCCCCAGGGCCATGCAGAGCACGCTGCCACTGTGCCTGATTTCGTGGGCAATCTGCGCATGAGCCCGTCGATCTTGTGCAGAGTGGTGTCGGTGAAGTTCTTGGCCGACACAGAGACCGACGAGGTGTATGCTCGCATGCGCCTCGTCCCCATCTCCGACGACGAGCAGAACAGCAGCGTCGAGGATTCCGAGGCCGAGTCGCGGCCTCCGTCGCCGGCTGTCAATTCTCAGACTGAGACCGCGAATAACAATCACCCGCCGGCTTCTTTCGCCAAGACACTGACGCAGAGCGACGCGAACAACGGAGGCGGGTTCTCGGTGCCCAGATACTGTGCCGAGACCATTTCCCCCGCCTTGATTACTCCAGCGATCCGCCGGTGCAGACCGTTTTGGCCAAGGATGTCCATGGGGAAGTCTGGAAATTCAGGCATATTTACAGAGGAACCCCTCGCCGTCACTTGCTGACCACCGGGTGGAGCACATTCGTCAACCAGAAGAAACTCGTTGCTGGTGATGCAATCGTTTTCCTGCGCAGTGTCACTGGGGAGCTCTGCGTGGGCGTGCGCAGATCCACCAGAAGTACAACTGAATGCCTTTCTCATTCCCATTCCCATTCCCATGGCTCCTCTGCATGGCATTTGCCTGTTAGCGGCATCACCGCCAGTCCTGCTCCTCCTCACAGGGCCTCCAGATGGGAGGTCAAGGCCGCTGACTATTTCTCCGGCATTGCCACCGCCAATTCCAATGGGGCCACTGGCTTTTCTAGAAATAGAGGCAGAGTTAGCGCCAAATCTGTAATCGAGGCTTGTGCTCTGGCGGTCTCTGGACAGCCCTTTGAGGTCGTCTATTATCCCCGTGCTAGTACTCCTGAGTTCTGCGTTAAAGCCAAGTCTGTGGATGCTGCGCTCAGGATTCAATGGAGTCCCGGGATGCGGTTTAAGATGCCCTTCGAGACCGAGGACTCTTCAAGGATCAGCTGGCTTATGGGTACCGTTTCTTTCGTACAGTTTGCAGACCCGGTGCTTTGGCCTAATTCGCCTTGGCGCCTTCTTCAGGTAACATGGGATGAGCCAGATATGTTACAAAATGTGAAAAGAGTCAGCACATGGGCGGTCAAGTCGGGACCCAAGATGCCACTCAATTCAA_-_ATGACTCCTTTCCCTTTACCAAAGAAGAAGCTAAGGGTTACTCACTCTCCAGATTTCCAGCTTGAAGGGCAAGGAATCATGGGGCTTCAGATGAGTACAGTTAGCAATAACCTGCTAAGGCCAATTAAACCTTGGCATGGTTTTTCAGACAGTGTTCCTGTGAGCATCCAGGGAGCCAGGCATGATCGCATTTATGGGATCTCTCTATCAGAATTTTTTAGTAACAAAGGTCAAAATGGGTTGTTCTTCAAGCATCCATCTCACCAAGAGCAGGGGGTTATATCGAACCGTGTCTCCACAGATCTTAACATAGGAAATTCTCCACGGAATGATGGCTCTGGTATGCAGAGTAGCCCTTCTTCATTCTTGACAGCAGGAAATTCATCACAAAATGAACAGAAAACAAGTAGTGGATCGGGTAGTAGCTCAACCACAAAAGGCTCATCCTTTCTGCTGTTTGGAAAGCCAATACACGCAGCACCGTCTCCTAAATCTTACAATCAACAGCAATCCGGATTGAGCTCCTCAGATGGGGCAGCTTTTCACACGTTTACTGAGAATGGTTCACCAGGGCTAACCAGTAACACCTCAAGTAATGGAAATCAAGAAGCTTTAGAAAGGGTGCAAAAATTGATCACAGGCGGGAGAGATGGGACCAAATTATCTGAAAATTATGAGTTACGACTTTCCAATGGGGAGAGCCTGGATTTTGCAGGAACCAAGGGTATCAGAAGTCTTCAATGGTTTAAGGATCAGACTTCGACTCTAAAGCTGGAGAAGGATAAACTAGAAAATACATTTGAAGACAGCATCGTTCATTGTAAAGTATTCAAAGAGACTGAAGAAGTTGGTCGAACTCTCGACCTTTCGTTGTTTTGTACATATGAGCAGCTCTATGACAGGCTGGCAAAGATGTTTGGTATTGAGGAATCAGAGTTGTCAAATCGTGTCCTCTACAAAGGTTTGGGCGGATCTGTGAGGCATGCTGGAGATGAACCATACAAGGATTTCATGAAGACTGTGAGGAGGCTTACAATTTTATCCGACTCTGGAAGTGACAACATGGCAAGATAA___GACTGTTCTGTGCTATATTTCATTCGGGATTCTTCAAGTACCATGTTGTTGGCTTCATTTTCCAAGGTTTATCTGACTTAGCCACATAATTGAATGGTACTAGCTAGAATCATATTATATTGAACAGTGGATTATATAATGCAATAAAGCTAAGATCTGCAAAATTTCTGAAACATTGGCTCACTTATAACATTCTTATTATATAAGCTCTTTAGATACC

Fln Alignment:

sp_v1.1_unigene19880___ISNRVSTDLNIGNSPRNDGSGMQSSPSSFLTAGNSSQNEQXXXXXXXXXXXXXXXXFLLFGKPIHAAPSPKSYNQQQSGLSSSDGAAFHTFTENGSPGLTSNTSSNGNQEALERVQKLITGGRDGTKLSENYELRLSNGESLDFAGTKGIRSLQWFKDQTSTLKLEKDKLENTFEDSIVHCKVFKETEEVGRTLDLSLFCTYEQLYDRLAKMFGIEESELSNRVLYKGLGGSVRHAGDEPYKDFMKTVRRLTILSDSGSDNMAR
D5A843_______________MSTPVCTELNIGNSPQNDGSGMQSSPSSLLTVGNSSQNEQKTSSGSASSSTPKGSSFFLFGKPIHTAQSPKSYQQHQSGLSSSDGAAFHMFTENGSPGQSSNTSSNGNQEALERVQKLITGGRDGTKLSENYGLRLSHGESLDYAGTKGVRSLQWFKDQASILKLEKDKQENTCEDSIVHCKVFKETEEVGRTLDLSLFCTYEQLYDRLAKMFGIEESELSNRVLYKGLGGSVRHAGDEPYKDFMKTVRRLTILSDSGSDNMAR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
79	33			66	1.0
113		83	16		0.994512
115		16		83	0.994512
116			16	83	0.994512
118		83	16		0.994512
120	83	16			0.994512
122	83			16	0.994512
123	83		16		0.994512
124			16	83	0.994512
125		16		83	0.994512
625	80		20		0.995493
633		75	25		0.996473
2153		85		14	0.993533
2351		14		85	0.993533
2353		85		14	0.993533
2354	85	14			0.993533
2356			83	16	0.994512
2357	83		16		0.994512
2361	83			16	0.994512
2362	83			16	0.994512
2365		16	83		0.994512
2367	83		16		0.994512
2371		16	83		0.994512
2372	83			16	0.994512
2373	83	16			0.994512
2374	16		83		0.994512
2438	85			14	0.993533
2439		14		85	0.993533
2440			14	85	0.993533
2444	85	14			0.993533
2445		14	85		0.993533
2446	85			14	0.993533
2447		85		14	0.993533
2448	85		14		0.993533
2459		14		85	0.993533
2461		14	85		0.993533
2462	14			85	0.993533
2903	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1088	1108	CATTCC CATTCC CATTCC CAT	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain