SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17911

Length: 684 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17911 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase HSL1 n=2 Tax=Arabidopsis RepID=HSL1_ARATH	-	-	9.0e-31	41%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	28%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	3.229e-31	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	3.229e-31	58%
Blast2go	leaf development	GO:0048366	Biological Process	3.229e-31	58%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	3.229e-31	58%
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	3.229e-31	58%
Blast2go	binding	GO:0005488	Molecular Function	3.229e-31	58%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	3.229e-31	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	3.229e-31	58%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
203		25		75	0.996473
204		25	75		0.996473
205	25			75	0.996473
375	75			25	0.996473
379		75	25		0.996473
382	25			75	0.996473
383	75	25			0.996473
388	25			75	0.996473
389	25		75		0.996473
390			25	75	0.996473
391			25	75	0.996473
397	25			25	0.995533
398	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain