SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17557

Length: 1016 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17557

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	14 kDa zinc-binding protein n=5 Tax=Poaceae RepID=ZB14_MAIZE	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	zinc-binding protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	protein kinase C binding	GO:0005080	Molecular Function	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Histidine triad (HIT) protein	IPR001310	-	89%
Blast2go	Histidine triad-like motif	IPR011146	-	89%
Blast2go	Histidine triad motif	IPR011151	-	89%
Blast2go	Histidine triad, conserved site	IPR019808	-	89%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
56	80			20	0.995493
140	40		60		1.0
292	90	10			0.90298
294	90			10	0.90298
295	90	10			0.90298
299	88	11			0.923564
300	88	11			0.923564
303		88	11		0.923564
305	88			11	0.923564
309	88			11	0.923564
542		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain