SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16746

Length: 525 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene16746
GGACAGAAATTACTTAAAACAATGGAGAATAGGACCTTTGATTTGCCATCAAGGGCACACATTGATGCAGCTGCAATTAAGATGCCTGGCGGTATTCCCATTGTCGCAGCAAGTGCAACTTCAAGTCCAGCCACTGGAAGAATGGAGCGCATTGAGAGAACCTCCTCAGCCAATACTGTTTCTGGAATTAATGGAGTTGATCCAGCACAGAGTTCAGAGAAACTAAGGTTATCAGAAGATTTATCTGAGAAAACTAAAATATGGAAGCTGACTGAAATTACTGATTCTATCCAATGTCGGTGTATAACATTGCCGGAGAATGCAGCAGAGCCTGCAAGCAAGGTTTCACGGCTTCTATACACAAATTCTGGAGTCGGATTACTAGCTCTTGGATCTAATGCAGTGCACAAATTATGGAAATGGAACCGCAGTGAGCAGAATCCCAGTGGCAAGGCAACTGCAAGTGTTCATCCACAGCGCTGGCAACCAACCAGTGGTCTTCTCATGACCAATGATATAACTGAT

Ace file of the UniGene sp_v1.1_unigene16746

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative	-	-	4.0e-39	50%
FL-Next	sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	protein	-	-	7.2459e-40	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ0

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 175 - 1131

Fln protein: GQKLLKTMENRTFDLPSRAHIDAAAIKMPGGIPIVAASATSSPATGRMERIERTSSANTVSGINGVDPAQSSEKLRLSEDLSEKTKIWKLTEITDSIQCRCITLPENAAEPASKVSRLLYTNSGVGLLALGSNAVHKLWKWNRSEQNPSGKATASVHPQRWQPTSGLLMTNDITD

Protein Length: 176

Fln nts: GGACAGAAATTACTTAAAACAATGGAGAATAGGACCTTTGATTTGCCATCAAGGGCACACATTGATGCAGCTGCAATTAAGATGCCTGGCGGTATTCCCATTGTCGCAGCAAGTGCAACTTCAAGTCCAGCCACTGGAAGAATGGAGCGCATTGAGAGAACCTCCTCAGCCAATACTGTTTCTGGAATTAATGGAGTTGATCCAGCACAGAGTTCAGAGAAACTAAGGTTATCAGAAGATTTATCTGAGAAAACTAAAATATGGAAGCTGACTGAAATTACTGATTCTATCCAATGTCGGTGTATAACATTGCCGGAGAATGCAGCAGAGCCTGCAAGCAAGGTTTCACGGCTTCTATACACAAATTCTGGAGTCGGATTACTAGCTCTTGGATCTAATGCAGTGCACAAATTATGGAAATGGAACCGCAGTGAGCAGAATCCCAGTGGCAAGGCAACTGCAAGTGTTCATCCACAGCGCTGGCAACCAACCAGTGGTCTTCTCATGACCAATGATATAACTGAT

Fln Alignment:

sp_v1.1_unigene16746___GQKLLKTMENRTFDLPSRAHIDAAAIKMPGGIPIVAASATSSPATGRMERIERTSSANTVSGINGVDPAQSSEKLRLSEDLSEKTKIWKLTEITDSIQCRCITLPENAAEPASKVSRLLYTNSGVGLLALGSNAVHKLWKWNRSEQNPSGKATASVHPQRWQPTSGLLMTNDITD
Q9LRZ0_______________GLRTLRAFEARSFEA-SKASIDMK-------VSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSK-DSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
430	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain