SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16585

Length: 1065 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16585 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding protein MNB1B, putative n=1 Tax=Ricinus communis RepID=B9S139_RICCO	-	-	1.0e-25	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	hmg protein	-	-	2.01937e-25	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.01937e-25	76%
Blast2go	nucleus	GO:0005634	Cellular Component	2.01937e-25	76%
Blast2go	plastid	GO:0009536	Cellular Component	2.01937e-25	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	High mobility group, HMG1/HMG2	IPR000910	-	2.01937e-25	76%
Blast2go	High mobility group, superfamily	IPR009071	-	2.01937e-25	76%

Full-Lengther Next Prediction

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
479			93	6	0.999264
483			6	93	0.999264
485		93	6		0.999264
486	6			93	0.999264
489	93	6			0.999264
490		6	93		0.999264
492	6			93	0.999264
493			6	93	0.999264
494			6	93	0.999264
496		6		90	0.997544
500		93	6		0.999264
502		6	93		0.999264
517	3	90		6	0.997544
526	14			85	1.0
528		92		7	0.999602
529		88	11		1.0
530	11	88			1.0
532	7		3	85	0.997433
533	92		7		0.999602
534			7	92	0.999602
536	7	3		88	0.998862
537	7	3	88		0.998862
539		92	7		0.999602
540			11	88	1.0
546	92	8			0.999718
548	4	8		86	0.999539
549			8	86	0.999539
553		4	8	86	0.999539
556		8	86		0.999539
560	86	4	8		0.999539
563			86	4	0.999642
567		86	9	4	0.999642
568	9	4	4	81	0.999363
570	86		9	4	0.999642
643		14		85	0.999981
663	84		15		0.999986
665		84	15		0.999986
667			15	84	0.999986
668	15	84			0.999986
670	15			84	0.999986
671		84	15		0.999986
672	84	15			0.999986
674	15	84			0.999986
677		84	15		0.999986
679		16		83	0.999991
680	16	83			0.999991
682			16	83	0.999991
683	16			83	0.999991
684		16		83	0.999991
685		83	16		0.999991
746		86	13		0.999973
747			14	85	0.999981
749	7	14		7	0.999974
750	14	78	7		0.999974
752			21	78	1.0
947		11		88	0.923564
948		11		88	0.923564
949		11	77		0.968132
951		77	11	11	0.968132
952	12		87		0.992554
953	12	87			0.992554
983		66		33	1.0
1032	75			25	0.996473
1035			20	80	0.995498
1036	75			25	0.996473
1053	20			80	0.995493
1054		20	80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain