SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16442

Length: 2185 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16442
CGTCGTGACCTTGGCTGTCACTCAGTTGATTTTTGCACACAAAAGGAGGTTTCCATATCGATGCCGTATTTAANGGCGTTCCCGATCGTTTGATTGTGAGAAGGATGCAGATTTTGTGTTAATTATCTTCTGAGATCGGCCTCTGATATTTAGCCCGAACTCCTTATGCGGGGTGCCCGTCTGGCCTTAAATCGTTCGGTTTAGCCCGAACTTTGTAGGCTTGAAAAAGATGTTTTAATCGGGGAAGTATTTGGAGGTCATCGGGGCTTAAATATTGGAGCTGTTCAGCATTCTTGAGAAATTTGCTTTTGCAGGGACGAATCTTCTGTTTTCATTGTGGAGATTTCTGATCTGGTATTTGCCTCTTGTGCTGTTTGGCTGTGGTCTTATTTATAAAGTTTCGAATTCTTGAAGCTTTGCCGGGCTGAAATCCCGCTGTTTAGCCCGAACTTTGAATTATTGAGAGAAATTGTTTGCATCGGGCGAAGTTTGCGGATCTTATCGGGCTTAAATACTGAAGCCGTTTTGCAGTCCTGAAAATATCGCATTTGTAAGGGTGAATTTTCTGTTTTCTTCGGTGCTTAGGGTTTAATAGTGTTCTTGAAAAAATATTTAAATCGGCAAACTTTTTGTTATTTGGCTCAAGTATCGAAGCCATATTGTTGGTCCGCCATTTTGTATGCCTGAAAAGTTCGCTTTGGAGGGACACGTTTTCAGTTCATTCCAGTTCTTAGCTTTTGCTATGCTGAAAGCATAGGGTTAGGGTTTCAAATCGTTAAGCGTGAGTAATACTGAAAAACATAGTAGATCTAAATCTACCGTGTTAGATTTTTTCTGTTTGGTCTTTAGGTTGGTCACCTAAACTCAATTTTTGAGATTTGCAGGAAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAAATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTCGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAATTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGACGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATAGAGGGGCTAAAGACGCTTCGCGGACTGGCAACGATATCTATAAGAAATACAGGCGAAGCAGGGTTTCTGAAGTGCGGGATTGGCCAAACGATCCTGTACAGCAGTTCGGGTTCGATGCCGCTCCTTGCCACAGCGACTGCGATTCGTCGTCGTCTGTAGTAGTGGACAATGATGCTAATTCTGGCGAAGATTTCCCGTGTGATGTGAAACCCTTGCAGGAAAGTGGTTTTGATCTGAATCTTTACAAGGAATGGAGAAGCCCGGAGCGGCAGGATCGGAAAATGTTGCCAGATTTGAATCTTCCTCCCTGTGAAGATGATGCGGAAGATTACCGGGATTTTCTGGCCATATCGTTGCGGATCTGATGAGAACAGACGGCAATATTCTTGATTTCGTCTCCTCCGTCCGACGGGAGTTTGTTTGTGATCGCAAACGCTAATTACAGTCAATTTGCCGTGCTCAAAGGTGTGATCTGTTTTTCTTACAATTAATCCTTCTGAGTATTCGACGGATCCTATTGGTATGTAGGTCTGTTCTCAAGAAATTTTCTTTTATCTAAAAAAATAGTGAAAATATCTAGAATTACCACAATGGTCATCTTATTTTTGTGACTCTGGATTGCGAGTTGCTCTTTGAAATATACATTTGAGACCGGCGAGGCCAAATGGTCCCTAGTTATTTATTCGGGTCATCCTTTTTGGCTATAATACATAGTAGATTGTACAGAGAAGATTGTAATGGATTATGTTATTAGCAGTTTATGGTCAATTAGATTTGATTAATGGCCATTCTGATTTAATGAAACAGATTATGGAGTTTGACTCTGCTATTTTTT

Ace file of the UniGene sp_v1.1_unigene16442

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA	-	-	3.0e-14	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	ethylene-responsive element binding factor-like protein	-	-	5.46522e-14	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	5.46522e-14	88%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	5.46522e-14	88%
Blast2go	nucleus	GO:0005634	Cellular Component	5.46522e-14	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	5.46522e-14	88%
Blast2go	DNA-binding, integrase-type	IPR016177	-	5.46522e-14	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F4

Fln msg: your sequence is longer than subject: 255 - 189

Fln protein: MLRQQARNAWHDVENVTKVKSTVKEVKFRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTAEEAARAYDEAARALRGAKAKTNFAVPCDDQSTSHSSTVESSSGPRNQDDSKKAFNLNGRGTRLVEISTRTHRNRGAKDASRTGNDIYKKYRRSRVSEVRDWPNDPVQQFGFDAAPCHSDCDSSSSVVVDNDANSGEDFPCDVKPLQESGFDLNLYKEWRSPERQDRKMLPDLNLPPCEDDAEDYRDFLAISLRI*

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGATTTTTGCACACAAAAGGAGGTTTCCATATCGATGCCGTATTTAAaGGCGTTCCCGATCGTTTGATTGTGAGAAGGATGCAGATTTTGTGTTAATTATCTTCTGAGATCGGCCTCTGATATTTAGCCCGAACTCCTTATGCGGGGTGCCCGTCTGGCCTTAAATCGTTCGGTTTAGCCCGAACTTTGTAGGCTTGAAAAAGATGTTTTAATCGGGGAAGTATTTGGAGGTCATCGGGGCTTAAATATTGGAGCTGTTCAGCATTCTTGAGAAATTTGCTTTTGCAGGGACGAATCTTCTGTTTTCATTGTGGAGATTTCTGATCTGGTATTTGCCTCTTGTGCTGTTTGGCTGTGGTCTTATTTATAAAGTTTCGAATTCTTGAAGCTTTGCCGGGCTGAAATCCCGCTGTTTAGCCCGAACTTTGAATTATTGAGAGAAATTGTTTGCATCGGGCGAAGTTTGCGGATCTTATCGGGCTTAAATACTGAAGCCGTTTTGCAGTCCTGAAAATATCGCATTTGTAAGGGTGAATTTTCTGTTTTCTTCGGTGCTTAGGGTTTAATAGTGTTCTTGAAAAAATATTTAAATCGGCAAACTTTTTGTTATTTGGCTCAAGTATCGAAGCCATATTGTTGGTCCGCCATTTTGTATGCCTGAAAAGTTCGCTTTGGAGGGACACGTTTTCAGTTCATTCCAGTTCTTAGCTTTTGCTATGCTGAAAGCATAGGGTTAGGGTTTCAAATCGTTAAGCGTGAGTAATACTGAAAAACATAGTAGATCTAAATCTACCGTGTTAGATTTTTTCTGTTTGGTCTTTAGGTTGGTCACCTAAACTCAATTTTTGAGATTTGCAGGAAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAA_-_ATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTCGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAATTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGACGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATAGAGGGGCTAAAGACGCTTCGCGGACTGGCAACGATATCTATAAGAAATACAGGCGAAGCAGGGTTTCTGAAGTGCGGGATTGGCCAAACGATCCTGTACAGCAGTTCGGGTTCGATGCCGCTCCTTGCCACAGCGACTGCGATTCGTCGTCGTCTGTAGTAGTGGACAATGATGCTAATTCTGGCGAAGATTTCCCGTGTGATGTGAAACCCTTGCAGGAAAGTGGTTTTGATCTGAATCTTTACAAGGAATGGAGAAGCCCGGAGCGGCAGGATCGGAAAATGTTGCCAGATTTGAATCTTCCTCCCTGTGAAGATGATGCGGAAGATTACCGGGATTTTCTGGCCATATCGTTGCGGATCTGA___TGAGAACAGACGGCAATATTCTTGATTTCGTCTCCTCCGTCCGACGGGAGTTTGTTTGTGATCGCAAACGCTAATTACAGTCAATTTGCCGTGCTCAAAGGTGTGATCTGTTTTTCTTACAATTAATCCTTCTGAGTATTCGACGGATCCTATTGGTATGTAGGTCTGTTCTCAAGAAATTTTCTTTTATCTAAAAAAATAGTGAAAATATCTAGAATTACCACAATGGTCATCTTATTTTTGTGACTCTGGATTGCGAGTTGCTCTTTGAAATATACATTTGAGACCGGCGAGGCCAAATGGTCCCTAGTTATTTATTCGGGTCATCCTTTTTGGCTATAATACATAGTAGATTGTACAGAGAAGATTGTAATGGATTATGTTATTAGCAGTTTATGGTCAATTAGATTTGATTAATGGCCATTCTGATTTAATGAAACAGATTATGGAGTTTGACTCTGCTATTTTTT

Fln Alignment:

sp_v1.1_unigene16442___FRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFAVPCDD
D5A9F4_______________FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDTAEDAARAYDDAARALRGPKAKTNFALAADN

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
104	75		25		0.996473
106		14	85		0.993533
107	85		14		0.993533
109		14	85		0.993533
110		85	14		0.993533
111	85			14	0.993533
114		14		85	0.993533
115		14		85	0.993533
122		14		85	0.993533
124	85	14			0.993533
126	14			85	0.993533
179		57		42	1.0
181	28		71		1.0
298		12	87		0.992554
326			11	88	0.923564
331		11		88	0.923564
332		11		88	0.923564
335		88	11		0.923564
336	88		11		0.923564
337		11		88	0.923564
342		11	88		0.923564
344		11	88		0.923564
345	88			11	0.923564
346		11		88	0.923564
347	11			88	0.923564
370		44	55		1.0
429	20		80		0.995493
436	16	83			0.994512
464	20		80		0.995493
680		33		66	1.0
720	85			14	0.993533
726		14		85	0.993533
728	14	71	14		0.984337
729	14	85			0.993533
781		12		87	0.992554
824		16		83	0.994512
856		33		66	1.0
1236	75		25		0.996473
1238	75	25			0.996473
1240		75		25	0.996473
1247			75	25	0.996473
1251	75	25			0.996473
1254		75	25		0.996473
1258	25		75		0.996473
1259	75	25			0.996473
1260			75	25	0.996473
1262	25		75		0.996473
1345		20		80	0.995493
1417			83	16	0.994512
1418		16	83		0.994512
1630			85	14	0.993533
1684		14		85	0.993533
1735	88		11		0.923564
1890	15			84	0.999986
1899	76			15	0.999983
2169	37		62		1.0
2178		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain