SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15835

Length: 667 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15835

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:3.6.4.3)	-	-	2.0e-22	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	atp binding	-	-	2.5621e-22	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thiamine diphosphokinase.	EC:2.7.6.2	-	2.5621e-22	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Thiamine metabolism	00730		2.5621e-22	85%
Blast2go	Metabolic pathways	01100		2.5621e-22	85%
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	2.5621e-22	85%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	2.5621e-22	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	2.5621e-22	85%
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	2.5621e-22	85%
Blast2go	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	2.5621e-22	85%
Blast2go	mismatch repair	GO:0006298	Biological Process	2.5621e-22	85%
Blast2go	thiamine metabolic process	GO:0006772	Biological Process	2.5621e-22	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	2.5621e-22	85%
Blast2go	thiamine diphosphokinase activity	GO:0004788	Molecular Function	2.5621e-22	85%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	2.5621e-22	85%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	2.5621e-22	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	2.5621e-22	85%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	2.5621e-22	85%
Blast2go	plastid	GO:0009536	Cellular Component	2.5621e-22	85%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	Probability
57	16	83	0.994512
523	48	51	1.0
568	6	93	0.999364

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain