SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15429

Length: 1424 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15429

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=3 Tax=Picea sitchensis RepID=A9NK08_PICSI	-	-	89%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	multicatalytic endopeptidase complex	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	95%
Blast2go	Glutamate--cysteine ligase.	EC:6.3.2.2	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	95%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	95%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	95%
Blast2go	defense response to fungus	GO:0050832	Biological Process	95%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	95%
Blast2go	indole phytoalexin biosynthetic process	GO:0009700	Biological Process	95%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	95%
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	95%
Blast2go	defense response to insect	GO:0002213	Biological Process	95%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	95%
Blast2go	response to heat	GO:0009408	Biological Process	95%
Blast2go	response to ozone	GO:0010193	Biological Process	95%
Blast2go	glutathione biosynthetic process	GO:0006750	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	95%
Blast2go	glutamate-cysteine ligase activity	GO:0004357	Molecular Function	95%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	95%
Blast2go	vacuole	GO:0005773	Cellular Component	95%
Blast2go	phragmoplast	GO:0009524	Cellular Component	95%
Blast2go	proteasome core complex, alpha-subunit complex	GO:0019773	Cellular Component	95%
Blast2go	spindle	GO:0005819	Cellular Component	95%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	nucleus	GO:0005634	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	95%
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	95%
Blast2go	Proteasome A-type subunit	IPR023332	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX29

Fln msg:

Fln protein: MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLEESEVEAIVAEVEAEKAAAEAAKKAPTPRD*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTTGCTTGTTCGCTACTCCTCTCCTTTTTCTCTGTCTGAAGAATTTGGATGAGCAACTCTCTTGCTGTAGTAGCCCAGTGAGTGTTGCAGGAAGGCATATCCATATTCAGGGTGCTCTGTTCTCGGGAAAACTATCTTTAGCTGAGGAGTACATTTGCACATAATTTTAGGGTTCTGAAGGTGGTTTTGCGATCGTAAGA_-_ATGGCGAGATATGACAGAGCAATTACGGTGTTTTCACCAGACGGTCATCTGTTTCAGGTGGAGTATGCCTTAGAGGCCGTACGGAAGGGTAACGCAGCTGTTGGAGTTCGAGGGACTGATAACATCGTGTTGGCTGTCGAGAGAAAGTCCACGGCTAAGCTTGAAGATTCCAGAACTGTACGGAAAATTGTAAATCTAGATAACCACATTGCATTGGCTTGTGCGGGGCTCAAAGCAGATGCTCGTGTGCTGATTAACAAGGCTAGAATTGAGTGTCAAAGTCATAGACTGACTGTTGAGGATCCTGTTACTGTGGAATATATCACTCGATACATTGCAGGTCTCCAGCAGAAGTACACCCAAAGTGGTGGTGTGAGGCCTTTTGGTCTGTCCACACTCATTGTAGGCTTTGATCCATATACAGGTGCTCCTTCTCTTTACCAGACAGATCCATCTGGTACATTTTCAGCATGGAAGGCAAATGCGACAGGAAGAAATTCAAATTCTATCAGAGATTTTTTAGAAAAGAATTACAAAGAGACAGCAGGGCATGAAACTATAAAGCTTGCAGCCAGAGCATTACTGGAAGTTGTTGAAAGTAAAGGAAACAACATAGAGATTGCTGTGATGACACGCGATAAGGGGTTGCAGCAGCTTGAGGAATCTGAGGTTGAGGCTATTGTAGCTGAGGTTGAAGCAGAAAAAGCAGCGGCTGAGGCTGCGAAAAAGGCTCCCACTCCTAGAGATTAA___ATCTGAATGTTTCCTTTGCCATTAATTACAGGTCTACTGATATTTTTTGCCTGTTTGAGTTTCATTCAGTTTTATAACTGTCATTTCTCATTATGCATTCTGCTTTTATGATTTTGGCTTTTTCAATCTTCGAAAGGCAGTTTTCAAGGAAATCACTAAACAAATCTCCGTTGGAGCCAGTGAACTAATAAATAGCACATTTGAACAGGCATTTCTATATAATTGGATTACATGACAATATATGCCTTTGCACAAAAAGAGAATGATGCATATAGGGATGGTGTAGGATGTTTTCTGATGTTCAACATTTACTTTACATGTAGCTGTTGGAACAATTTTCTTACATGTTGCAAATGTAAGCATGGAATAGATCATAGGAAGGTCATCACTTACAAAGAGTTTAAACTTAAGCTATTTTTTAATCTGGGACTGTAGGTTCATATATACA

Fln Alignment:

sp_v1.1_unigene15429___MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLXXXXXXXXXXXXXXXXXXXXXXXXXPTPRD
A9NX29_______________MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLEESEVEAIVAEVEAEKAAAEAAKKAPTPRD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
714	96		3		0.993591
1081		3		96	0.99245
1082			3	96	0.993037
1084		3		96	0.993037
1085	96		3		0.993591
1089		4		95	0.996599
1090		4		95	0.996599
1098		4		95	0.99692
1099	4			95	0.997494
1100		4		95	0.997494
1333		35	64		1.0
1381	50			50	1.0
1383	50		50		1.0
1384		33		66	0.997452
1387	33			66	0.997452
1388	66			33	0.997452
1389			33	66	0.997452
1390		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain