SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15384

Length: 2457 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15384
CGTCGTGACCTTGGCTGTCACTCAAGTTTTCCGCAGCAATAAATGGTGGTTATCTCTTGGGTTTCCCTTGGATTCTCCCAGTCTGCACTCTGAAAAATGATTCTGTCATTTCCCCAATTCTCCATGCCCACAGCTGGATTGACTCGGGATATTAAGTGAATACCTGTGTAAACAGCTGGTACCCACATTCCCCACCAATCACTAATTACGCCACTCCTTCGGCCACCATTACTACTTCCCGTCTCCCACCGTTGTCATCAAATCTATCTATCGCTCTTCACACTGCAATTCCTTGATCTCATACATACTCTTTGGATAATCTGCTACTGTTGGTGATTCTTATGTTTTTCTGTGGATTCAATGCACATAGCCTTTTAATCCCATCCAAGAGAAGTTCAGTCCTAATCAAAAGTCCGTTCTCCATATCCTTAAAAGTCATATGCTCTGCCAGTTTCCTGTTCTAGCAAAAGGGCTAATACCCACTTAATCAGTAGTAGAGTTTCAGTTAAAAAGGCTTCCTATATGGCCCAGAAATCTATTTATTAGAACATATTTGCACCAGGTTGTTACTACATCATATTCTTTTGCAGCCCAAATGCATCCCATGATGTACCAACTAGCATCATTTTTCCTATCTGCATTGCTTCTGGCAGAGGTTTTTTCTTATTCTGCAAGTGCCAAAGAGCATTCACATGACTCTCTGAGGCTCAGGCTTGTTCATAAAAACTCCCCCCATTCTCCCTTGAGGAAAACATTTTCTTCCCGACGAGAGCACCTAGAATACATTCTTCATGAAGATTCGATACGAGCTAAGGGCTTTCAACGAGTCGTGGAACAACATCTCCCTCGACGTCCAGAGTTCGAGGCTTCATCAATAGTCAAACGATCAGCTCATATCCACGGAAAGGTCTACAAGGCCCACGTAATCTCAGGCGCTTCGGCAGGCTCTGGGCAGTACTTTGTGGACTTCTACATTGGCACCCCACCTCAGAAGTTCATGCTGATTGCAGATACGGGCAGTGATCTTCTTTGGGTACGTTGTTCTGCTTGTAGAAAATGTCTTAGAAAGCCTGGATCGGCTTTCCTAGCCAGGCATTCCTCAAGTTTTTCACCAATACATTGTTATGCACCTGCCTGTCAGCTGGTTCCCCCACCCCAAAATTCTTCATGTAGCCTCACACGCCTTCACAGTTCCTGTATGTATGATTATGTTTATGCAGACCTGTCTGATAGCACTGGGATTTTCTCCCATGAGACGGCAACCCTTAACACAAGTTCAGGGTTCACTACCAGAATAAGGAATCTGGCTTTTGGGTGTGGGATTAGAAGCTCAGGGCCTAGTTTTACAGGCCTATCATTCAATGGGGCACATGGGGTGATTGGGTTGGGGAAGGGTGCTACATCGTTCGTTTCACAGATTGGTAGGAGCGTTGGAGACAAGTTCTCCTATTGCTTGGTGGACTACACTATTTCCCCACCAAAGACCAGTTATCTTGTGTTGGGGCAGAACCCTGTGAGACCTGCATTGAGGAGAGCCATGAGCTATACGCCCTTTTTGAGGAATAGTTTTGCAGAGACCTTCTATTATGTTGGGATTGAGCAGATTTGGGTTGCAGGAGCACTTCTTCCCATTCGTCCCAAGGTTTGGAATATTGATGCTCAGGGCAATGGGGGCACTGTCATTGATTCCGGTACAACCTTGACCTACTTTGTCCGGCCAGCGTACAAGAAAATCCTGGCAGCATTCCAGAAGGCTGTTGAGTATCCAAGAGTTAGGGCAATGCAGAACTTAGATCTGTGCTTCAATGTCTCAGGTATTGCCATGCCCAAATTACCTAAGCTTACTATTGTTTTGAAGGGCAATGCTCGGTTTGAGCCTCCTCCTCCAAACTATTTCATCGATGTTGTTGACAATGTCAAATGCTTGGCATTACAGGGTGTGAATTCCCCTTCTGCTTTCTCCATTCTAGGTAATCTTTTGCAGCAGGATTTTTATATTCAGTATGATAGAGAGAATTCTGTACTTGGGTTTGCTCATACTGACTGCTCCTTATCCTAGAGCTTTTGTTTCGTAGTGTTCATCTTGTTTGATTTATCCATCTCAATAGTAAAACAAACAAATCTTAGTTTTCTCTGGTGATTCTGGCCATGCTTTATGGTCATACTTCCCTAGCCAAGGAATCTATCAGGCAATAAGTCTGTCTGATTGGCTTATATTGGTTTTACACATTGTTTTGTATTTGAATCTCAATGCTGAATACCAAAGCTGCTATATGGATGTTGATGATGATTGTAACTCCATTGGCCTAATTCGGCATTATATAAAAGTTTTTACGGTGTTTCTGAGTGTAGCAAGATATCTGGCAACTTATGTGATGTCTTGCCATTTGAGTGATGAAGAAAGAATGCAATGTTCTTACTTGCTTTGAAATGCATAGATTGTTTAAGGGCTTGCAA

Ace file of the UniGene sp_v1.1_unigene15384

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Basic 7S globulin 2 small subunit, putative n=1 Tax=Ricinus communis RepID=B9SEI2_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg:

Fln protein: MHPMMYQLASFFLSALLLAEVFSYSASAKEHSHDSLRLRLVHKNSPHSPLRKTFSSRREHLEYILHEDSIRAKGFQRVVEQHLPRRPEFEASSIVKRSAHIHGKVYKAHVISGASAGSGQYFVDFYIGTPPQKFMLIADTGSDLLWVRCSACRKCLRKPGSAFLARHSSSFSPIHCYAPACQLVPPPQNSSCSLTRLHSSCMYDYVYADLSDSTGIFSHETATLNTSSGFTTRIRNLAFGCGIRSSGPSFTGLSFNGAHGVIGLGKGATSFVSQIGRSVGDKFSYCLVDYTISPPKTSYLVLGQNPVRPALRRAMSYTPFLRNSFAETFYYVGIEQIWVAGALLPIRPKVWNIDAQGNGGTVIDSGTTLTYFVRPAYKKILAAFQKAVEYPRVRAMQNLDLCFNVSGIAMPKLPKLTIVLKGNARFEPPPPNYFIDVVDNVKCLALQGVNSPSAFSILGNLLQQDFYIQYDRENSVLGFAHTDCSLS*

Protein Length: 489

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTCCGCAGCAATAAATGGTGGTTATCTCTTGGGTTTCCCTTGGATTCTCCCAGTCTGCACTCTGAAAAATGATTCTGTCATTTCCCCAATTCTCCATGCCCACAGCTGGATTGACTCGGGATATTAAGTGAATACCTGTGTAAACAGCTGGTACCCACATTCCCCACCAATCACTAATTACGCCACTCCTTCGGCCACCATTACTACTTCCCGTCTCCCACCGTTGTCATCAAATCTATCTATCGCTCTTCACACTGCAATTCCTTGATCTCATACATACTCTTTGGATAATCTGCTACTGTTGGTGATTCTTATGTTTTTCTGTGGATTCAATGCACATAGCCTTTTAATCCCATCCAAGAGAAGTTCAGTCCTAATCAAAAGTCCGTTCTCCATATCCTTAAAAGTCATATGCTCTGCCAGTTTCCTGTTCTAGCAAAAGGGCTAATACCCACTTAATCAGTAGTAGAGTTTCAGTTAAAAAGGCTTCCTATATGGCCCAGAAATCTATTTATTAGAACATATTTGCACCAGGTTGTTACTACATCATATTCTTTTGCAGCCCAA_-_ATGCATCCCATGATGTACCAACTAGCATCATTTTTCCTATCTGCATTGCTTCTGGCAGAGGTTTTTTCTTATTCTGCAAGTGCCAAAGAGCATTCACATGACTCTCTGAGGCTCAGGCTTGTTCATAAAAACTCCCCCCATTCTCCCTTGAGGAAAACATTTTCTTCCCGACGAGAGCACCTAGAATACATTCTTCATGAAGATTCGATACGAGCTAAGGGCTTTCAACGAGTCGTGGAACAACATCTCCCTCGACGTCCAGAGTTCGAGGCTTCATCAATAGTCAAACGATCAGCTCATATCCACGGAAAGGTCTACAAGGCCCACGTAATCTCAGGCGCTTCGGCAGGCTCTGGGCAGTACTTTGTGGACTTCTACATTGGCACCCCACCTCAGAAGTTCATGCTGATTGCAGATACGGGCAGTGATCTTCTTTGGGTACGTTGTTCTGCTTGTAGAAAATGTCTTAGAAAGCCTGGATCGGCTTTCCTAGCCAGGCATTCCTCAAGTTTTTCACCAATACATTGTTATGCACCTGCCTGTCAGCTGGTTCCCCCACCCCAAAATTCTTCATGTAGCCTCACACGCCTTCACAGTTCCTGTATGTATGATTATGTTTATGCAGACCTGTCTGATAGCACTGGGATTTTCTCCCATGAGACGGCAACCCTTAACACAAGTTCAGGGTTCACTACCAGAATAAGGAATCTGGCTTTTGGGTGTGGGATTAGAAGCTCAGGGCCTAGTTTTACAGGCCTATCATTCAATGGGGCACATGGGGTGATTGGGTTGGGGAAGGGTGCTACATCGTTCGTTTCACAGATTGGTAGGAGCGTTGGAGACAAGTTCTCCTATTGCTTGGTGGACTACACTATTTCCCCACCAAAGACCAGTTATCTTGTGTTGGGGCAGAACCCTGTGAGACCTGCATTGAGGAGAGCCATGAGCTATACGCCCTTTTTGAGGAATAGTTTTGCAGAGACCTTCTATTATGTTGGGATTGAGCAGATTTGGGTTGCAGGAGCACTTCTTCCCATTCGTCCCAAGGTTTGGAATATTGATGCTCAGGGCAATGGGGGCACTGTCATTGATTCCGGTACAACCTTGACCTACTTTGTCCGGCCAGCGTACAAGAAAATCCTGGCAGCATTCCAGAAGGCTGTTGAGTATCCAAGAGTTAGGGCAATGCAGAACTTAGATCTGTGCTTCAATGTCTCAGGTATTGCCATGCCCAAATTACCTAAGCTTACTATTGTTTTGAAGGGCAATGCTCGGTTTGAGCCTCCTCCTCCAAACTATTTCATCGATGTTGTTGACAATGTCAAATGCTTGGCATTACAGGGTGTGAATTCCCCTTCTGCTTTCTCCATTCTAGGTAATCTTTTGCAGCAGGATTTTTATATTCAGTATGATAGAGAGAATTCTGTACTTGGGTTTGCTCATACTGACTGCTCCTTATCCTAG___AGCTTTTGTTTCGTAGTGTTCATCTTGTTTGATTTATCCATCTCAATAGTAAAACAAACAAATCTTAGTTTTCTCTGGTGATTCTGGCCATGCTTTATGGTCATACTTCCCTAGCCAAGGAATCTATCAGGCAATAAGTCTGTCTGATTGGCTTATATTGGTTTTACACATTGTTTTGTATTTGAATCTCAATGCTGAATACCAAAGCTGCTATATGGATGTTGATGATGATTGTAACTCCATTGGCCTAATTCGGCATTATATAAAAGTTTTTACGGTGTTTCTGAGTGTAGCAAGATATCTGGCAACTTATGTGATGTCTTGCCATTTGAGTGATGAAGAAAGAATGCAATGTTCTTACTTGCTTTGAAATGCATAGATTGTTTAAGGGCTTGCAA

Fln Alignment:

sp_v1.1_unigene15384___LRLRLVHKNSPHSPLRKTFSSRREHLEYILHEDSIRAKGFQRVVEQHLPRRPEFEASSIVKRSAHIHGKVYKAHVISGASAGSGQYFVDFYIGTPPQKFMLIADTGSDLLWVRCSACRKCLRKPGSAFLARHSSSFSPIHCYAPACQLVPPPQNSSCSLTRLHSSCMYDYVYADLSDSTGIFSHETATLNTSSGFTTRIRNLAFGCGIRSSGPSFTGLSFNGAHGVIGLGKGATSFVSQIGRSVGDKFSYCLVDYTISPPKTSYLVLGQNPVRPALRRAMSYTPFLRNSFAETFYYVGIEQIWVAGALLPIRPKVWNIDAQGNGGTVIDSGTTLTYFVRPAYKKILAAFQKAVEYPRVRAMQ-NLDLCFN-VSGIAMPKLPKLTIVLKGNARFEPPPPNYFIDVVDNVKCLALQGVNSPSAFSILGNLLQQDFYIQYDRENSVLGFAHTDC
A9NXW9_______________LRIDLVRTDSPLSPFSPGNISSTER--------------FKRAIKRSQDRLEKLQMS--VDEVKAVEAPVY---------AGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMCQALP---MYSCS----GANCEYLYSYGDQSSTQGILSYESFTLTSQS-----LPHIAFGCGQENEGG-----GFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNA--KTVSSTPLVQSRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHFEG-ADFNLPKENYIYTDSSGIACLAMLPSN---GMSIFGNIQQQNYQILYDNERNVLSFAPTVC

SNPs (tot: 99)

Position	A %	C %	G %	T %	Probability
216		66		33	0.997452
218	66		33		0.997452
219		66		33	0.997452
220			33	66	0.997452
225		66	33		0.997452
230		66		33	0.997452
251		33	66		0.997452
271	84			15	0.999986
339	1			94	0.936582
342		5		94	0.999994
348		3		96	0.989722
353	96		3		0.991825
356		3		96	0.993591
358			3	96	0.993591
362	4			96	0.99411
363		3	96		0.993591
365		3	96		0.993591
397		96	3		0.999846
398	96			3	0.999846
399	96	3			0.999846
401	96			3	0.999846
404	96	3			0.999846
405		3	96		0.999846
409	96			3	0.999846
644		4		92	0.987114
645	92		7		0.999999
651	93	4	2		0.985381
657			5	94	0.9982
661			91	8	1.0
664		10	89		1.0
666	87	4			0.999414
667	6	12	81		0.999943
668	12		81	6	0.999943
781	86			13	0.999973
784		13	86		0.999973
786	86		13		0.999973
787		86	13		0.999973
790	86			13	0.999973
791		13	86		0.999973
793	86	13			0.999973
795	86	13			0.999973
796	13	86			0.999973
1227		12		87	0.992554
1228	87		12		0.992554
1230		12	87		0.992554
1231		87	12		0.992554
1232	87			12	0.992554
1239			12	87	0.992554
1252		12	87		0.992554
1253	12		87		0.992554
1351		90	10		0.90298
1353	90	10			0.90298
1356			10	90	0.90298
1357	10			90	0.90298
1358		10		90	0.90298
1359	90	10			0.90298
1360		90		10	0.90298
1361	90			10	0.90298
1365	10	90			0.90298
1380	11		88		0.923564
1441		37	62		1.0
1473		10	90		0.90298
1550		83	16		0.999991
1558	88		11		0.923564
1564		88		11	0.923564
1566	11	88			0.923564
1778	91	8			0.999807
1779			8	91	0.999807
1780		90		9	0.999842
1782	90		9		0.999842
1783	90			9	0.999842
1786		9	90		0.999842
1787		9		90	0.999842
1790			90	9	0.999842
1794	90			9	0.999842
1795	90		9		0.999842
1800		9	90		0.999842
1801	90			9	0.999842
1802	90	9			0.999842
1803	9	90			0.999842
1955		7		92	0.999602
1957	88	3		7	0.998862
1958	88	11			1.0
1959			11	88	1.0
1961		87	12		1.0
1962	8	87	4		0.999414
1968	4		8	87	0.999414
1970		91		8	0.999766
1972		8		91	0.999766
1973	8			91	0.999766
1977	8	91			0.999766
2134	94			5	0.998744
2135	88	11			1.0
2136	4			95	0.996599
2138		2		93	0.983471
2139	4	4		90	0.9465
2310	92	7			0.999532
2450	25			75	0.996473
2452		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain