SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14962

Length: 1605 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14962

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=A9NMQ0_PICSI	-	-	95%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	fructose-bisphosphate aldolase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-bisphosphate aldolase.	EC:4.1.2.13	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	89%
Blast2go	Pentose phosphate pathway	00030	89%
Blast2go	Fructose and mannose metabolism	00051	89%
Blast2go	Methane metabolism	00680	89%
Blast2go	Carbon fixation in photosynthetic organisms	00710	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	glycolysis	GO:0006096	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	fructose-bisphosphate aldolase activity	GO:0004332	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	nucleolus	GO:0005730	Cellular Component	89%
Blast2go	mitochondrial envelope	GO:0005740	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMQ0

Fln msg:

Fln protein: MSCFEGKYRDELIANAAYIATPGKGILAADESTGTIGKRLASINVENIETNRRLLREFLFTAPNALQYLSGAILFEETLYQKTAAGKPFVDVLNEGGVLPGIKVDKGTVDLAGTKGETTTQGLDGLAQRCQQYYNAGARFAKWRSVLKIGTTEPSPLAIQENANGLARYAIICQENGLVPIVEPEILVDGSHDIETCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKVTPEVIAEYTVRALQRTVPPAVPGIMFLSGGQSEEEATLNLNAMNKLQTKKPWTLSFSFGRALQASTLKTWAGKDENIPAAQAALLSRCKANSDATLGKYAGDSAKGNGVSESLHVKDYKY*

Protein Length: 360

Fln nts: ATGGGGAAATTATCGTCGTGACCTTGGCTGTCACTCAATTGTATTAGTGTGCGATTTGGTTATCTGCGGCGATTTTTTGTTGTGTTTTGTTTGATCATTCCTCAAGCTCTTGTAGAA_-_ATGTCTTGCTTCGAAGGAAAATACCGCGATGAGCTAATTGCCAACGCGGCGTACATAGCAACACCCGGTAAGGGAATTCTAGCTGCAGATGAGAGCACGGGAACCATCGGAAAGCGGTTGGCGAGCATCAATGTGGAAAATATTGAGACCAACAGGCGTCTGTTGAGGGAGTTCCTCTTCACTGCCCCTAATGCCTTGCAGTATTTGAGTGGTGCAATTCTGTTTGAAGAGACTCTCTATCAGAAAACTGCAGCTGGGAAGCCCTTTGTTGATGTCCTCAACGAAGGAGGGGTCCTGCCGGGCATAAAAGTAGACAAAGGAACAGTGGATCTTGCGGGAACCAAAGGTGAAACCACTACCCAGGGCCTGGATGGCCTTGCACAGAGATGCCAGCAATACTATAATGCCGGAGCAAGGTTTGCAAAATGGAGGTCCGTTCTGAAGATCGGAACTACGGAGCCCTCCCCACTTGCTATTCAGGAAAATGCAAATGGCCTTGCTCGTTATGCTATCATCTGCCAAGAGAATGGTTTAGTTCCTATTGTTGAGCCGGAAATTCTGGTAGATGGGTCTCATGATATTGAAACCTGTGCGGCTGTTACAGAGAGGGTTTTAGCTGCCTGTTACAAGGCCCTCAATGACCACCATGTTCTCCTCGAGGGAACACTCCTTAAGCCCAACATGGTAACACCAGGTTCTGATTCTCCCAAGGTTACCCCTGAGGTTATTGCAGAATACACAGTAAGGGCTCTTCAGAGGACTGTGCCACCTGCAGTGCCCGGCATAATGTTTCTATCCGGTGGGCAGAGTGAGGAGGAGGCCACCTTGAACTTGAATGCCATGAACAAGCTGCAGACCAAGAAGCCCTGGACTTTGTCATTCTCCTTTGGCCGGGCTCTTCAGGCCAGCACTTTGAAGACATGGGCTGGAAAGGATGAGAATATTCCTGCGGCTCAGGCTGCCTTGTTATCTCGATGCAAGGCGAATTCTGATGCCACTTTGGGCAAGTATGCAGGTGATTCTGCTAAGGGCAATGGTGTTTCTGAGAGCCTTCATGTCAAGGACTATAAGTATTGA___TTGATGACCACCTGCTATCCATCCATCTTCAGTGAAAAGATAGACCCCAGAGATGAGATATTTTCATTTGAATTTCATGTTAGTGGGTTGTTAGGCGAGTTTGACATTTTCTTTCTCATTCATTCTGCATATCCTATGATGTGTTGAAGAGAATGAATGCATGGATTAGTTTTGACGTTGGAATTATATTGTTTTCAATTGCTGTTTTAGTTTTATTAGAATAATGATCCGAGGTATTTAAACCTTGTTTCAGATAACAGTTCTTCTAACTGGAAGTTGTTTTCATTTAAGAATAAGTAGCAAAATATATGTTTGGCGTTCTGAAATAGTTTATGTTTGTAAATTGGTTCTAACCTTTATATTAACTTAGACAAAGATACAGTTTCAATAGATGATATGATGATGATAGTT

Fln Alignment:

sp_v1.1_unigene14962___MSCFEGKYRDELIANAAYIATPGKGILAADESTGTIGKRLASINVENIETNRRLLREFLFTAPNALQYLSGAILFEETLYQKTAAGKPFVDVLNEGGVLPGIKVDKGTVDLAGTKGETTTQGLDGLAQRCQQYYNAGARFAKWRSVLKIGTTEPSPLAIQENANGLARYAIICQENGLVPIVEPEILVDGSHDIETCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKVTPEVIAEYTVRALQRTVPPAVPGIMFLSGGQSEEEATLNLNAMNKLQTKKPWTLSFSFGRALQASTLKTWAGKDENIPAAQAALLSRCKANSDATLGKYAGDSAKGNGVSESLHVKDYKY
A9NMQ0_______________MSCFEGKYRDELIANAAYIATPGKGILAADESTGTIGKRLASINVENIETNRRQLREFLFTAPNAVQYLCGAILFEETLYQKSAAGKPFVDILNEGGVLPGIKVDKGTVDLAGTKGETTTQGLDGLAQRCQQYYNAGARFAKWRAVLKIGTTEPSPLAIQENANGLARYAIICQENGLVPIVEPEILVDGPHDIKTCAAITERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDAPKVTPEVIAEYTVRALQRTVPPAVPGIMFLSGGQSEEEATLNLNAMNKLQTKKPWTLSFSFGRALQASTLKTWAGKTENIPVAQAAFLSRCKANSEATLGKYAGDSSKGNGVSESLHVKDYKY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
327			20	80	0.995493
355		16		83	0.996358
509	83		16		0.995451
516		90	10		0.991528
517			10	90	0.991528
518	90		10		0.991528
522		10		90	0.993729
617		98		1	0.916052
877	93		6		0.989189
891	93		6		0.989189
900		92		7	0.991025
958	88		11		0.923564
1311		94		5	0.998578
1461		4	1	93	0.999943
1516		8		91	0.999807
1533	50		50		1.0
1541	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain