SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14817

Length: 1575 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14817

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATB2; ATB2; oxidoreductase	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	aldo keto reductase akr	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of translation	GO:0017148	Biological Process	86%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	86%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	86%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aldo/keto reductase	IPR001395	-	0.0	86%
Blast2go	NADP-dependent oxidoreductase domain	IPR023210	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPE7

Fln msg:

Fln protein: MAASSSAVLRRLHLGSQGLEVSAQGLGCMGMSAFYGPPKPDQEMISLIHHAVSRGITFLDTSDIYGPFTNEILIGKAIKGIRDKVQLATKFGVKNVDGKLEIEGDPAYVRACCEASLKRLDVEYIDLYYQHRIDTRVPIEATIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDAEEEIIPTCRELGIGIVPYSPLGRGFLSAGPKMVETLADDDFRRGTPRFSVENLENNKAIFERICEIASKKQCSPSQLALAWVHHQGNDVAPIPGTTKVKNLEDNTGALSVELTPLEMKELEDLVSSAGVFGDRYDDMDFTWMNAETPPLSSWQVKV*

Protein Length: 349

Fln nts: GACTTACTACAACCTCTTGTCGACGAAGATGAGCAGCAAAACCTATAAATACACAAATGAATTCCCCAGAACCCCATATCTGCTTTGATTGGGAAAGTGGGATATACTGATCAGACAACAGAGAA_-_ATGGCAGCATCATCATCGGCAGTCCTCCGTAGGTTACATTTGGGGTCGCAAGGATTAGAAGTATCAGCGCAGGGGTTGGGCTGCATGGGCATGTCTGCCTTCTATGGCCCTCCAAAACCCGATCAAGAAATGATATCTCTCATCCACCATGCTGTCTCCAGGGGCATCACTTTTCTCGACACTTCGGACATTTACGGCCCTTTCACCAACGAAATCCTCATTGGAAAGGCCATTAAAGGGATAAGAGACAAAGTCCAATTAGCCACAAAGTTTGGAGTGAAAAATGTAGATGGAAAATTAGAGATTGAAGGAGATCCTGCATATGTTCGAGCGTGCTGCGAGGCAAGCTTGAAGAGACTCGATGTTGAGTACATTGATCTTTATTATCAGCACCGTATTGACACTAGAGTCCCCATTGAAGCCACGATTGGAGAACTGAAAAAATTAGTGGAAGAAGGGAAAATAAAATACATTGGACTTTCTGAGGCTTCTGCATCAACAATTCGAAGGGCTCATGCTGTTCATCCTATAACAGCAGTGCAAATAGAGTGGTCATTGTGGACTAGGGATGCAGAGGAAGAAATCATTCCAACTTGCAGGGAGCTTGGAATTGGAATTGTGCCATACAGCCCTCTAGGGCGTGGCTTCCTATCTGCTGGACCAAAGATGGTTGAGACTTTAGCAGATGATGATTTCAGAAGGGGTACACCAAGGTTTAGTGTAGAGAATCTTGAAAATAATAAGGCTATATTTGAGCGAATATGTGAAATAGCTTCAAAGAAGCAGTGCTCTCCCTCTCAGTTGGCACTTGCTTGGGTTCATCATCAGGGAAATGATGTTGCACCAATACCAGGGACAACCAAAGTGAAGAATTTAGAAGATAACACAGGTGCTCTTTCTGTTGAGCTCACACCTTTGGAGATGAAGGAGTTAGAAGACTTGGTATCCTCAGCTGGTGTCTTTGGAGATCGATATGATGACATGGATTTCACATGGATGAACGCAGAAACACCTCCTCTGTCTTCATGGCAAGTTAAAGTATAA___TGCGTTTTTAACACATGCAAGTGAAATCGAAAGGTGGGAAGAGACTGGAAGTATCAAAATATGCAAATAAATACTGTCCAGTAGTGAGGGCATCTCTTTTTAAGGAACATAATTCTTTTGCCCTTCTTGTGTTTTCGTCTCAGAATAATAGGAATAAGATGCATTTGTATGTTGAATAAGGACTTCAAGTTATTGGTAATTGTGTCCGAAATAAGAACTTATTATCTGGTGTTGTAGGAGAGGATTCGCAAGTATATGTTGTACCTCTGATGGACGATTTGATTGAGAATGTAGGTCACATATCAATTGTCTCAGGTTGTCACCTATGGGCTGGCTGTGATATACAGTTAATTAGTCCCAATTGTTTCCTTTTCGAGAAACTATTTACTACAAATCTTTTGCTGCC

Fln Alignment:

sp_v1.1_unigene14817___SSSAVLRRLHLGSQGLEVSAQGLGCMGMSAFYGPPKPDQEMISLIHHAVSRGITFLDTSDIYGPFTNEILIGKAIKGIRDKVQLATKFGVKNVDGKLEIEGDPAYVRACCEASLKRLDVEYIDLYYQHRIDTRVPIEATIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDAEEEIIPTCRELGIGIVPYSPLGRGFLSAGPKMVETLADDDFRRGTPRFSVENLENNKAIFERICEIASKKQCSPSQLALAWVHHQGNDVAPIPGTTKVKNLEDNTGALSVELTPLEMKELEDLVSSAGVFGDRYDDMDFTWMNAETPPLSSWQ
A9NPE7_______________ATASTERRLHLGSQGLEVSAQGLGCMGMSAFYGPPKPDQEMISLIHYAVSKGITFLDTSDIYGPFTNEVLVGKAIKGIRDKVQLATKFGARFEDGKLEVHGDPAYVRAACEASLKRLDVECIDLYYQHRIDQKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVPYSPLGRGFLSAGAKLIENLADDDFRKDMPRFSAENLEKNKVIFERILEIASKKRCSPSQLALAWVHHQGNDVAPIPGTTKVKNLEENIGALSVELTPLEMKEIEDSVCSAGVFGDRYSDMGSTWMNSETPPLSSWQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1434		65		35	1.0
1550		90		10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain