SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14663

Length: 1641 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14663

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pyridoxine biosynthesis	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	pyridoxal phosphate biosynthetic process	GO:0042823	Biological Process	93%
Blast2go	response to UV-B	GO:0010224	Biological Process	93%
Blast2go	chlorophyll metabolic process	GO:0015994	Biological Process	93%
Blast2go	response to non-ionic osmotic stress	GO:0010335	Biological Process	93%
Blast2go	pyridoxine biosynthetic process	GO:0008615	Biological Process	93%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	93%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	93%
Blast2go	response to lipid hydroperoxide	GO:0006982	Biological Process	93%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	93%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	93%
Blast2go	catalytic activity	GO:0003824	Molecular Function	93%
Blast2go	cytosol	GO:0005829	Cellular Component	93%
Blast2go	endomembrane system	GO:0012505	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8T3

Fln msg:

Fln protein: MASDGVVTVYGNGPITDAKKSSYAVKVGLAQMLRGGVIMDVVNAEQARIAEEAGAAAVMALERVPADIRSQGGVARMSDPGLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTVADDMHHINKHNFRVPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDSHVLAEVSCGLGEAMVGINLNDEKVERYAERSE*

Protein Length: 311

Fln nts: TCTCATCTTCCAATGTACAGGATGCAAAGTTCTCGATTCTGATGAATTCCTCACATAACTACATTAAAGTGGATGGTGCATGACGAATCCCTTTTCGTTACAATCTTAAAGTCGACGATAGGGTTCAAACTTCTTCCCGAATTGATATCCAGATCTTGCGGTTATAATTCAATAAATTTCTGTGGACTATAATAAAACATGTCTCGCAATAATTTTTTAGATGGCTCGATAGAACTTGGGCGGTGTTGCTGATTCCTTTAACGCCAGCCTCAAAATACTTAGAAGCAGGATCTGCGAATCCTTGTAACAACATTATCTTATAGGCCATTCCGACCTTGTGGGCTCCTTCATTCACAGATATTGAAGATTTATTTTTCGTACCTCACAGAGCCTTCTACGAAATCCGGAAGGTTCTTTATTTGGAATCGAA_-_ATGGCAAGCGACGGAGTTGTTACTGTCTATGGTAATGGTCCAATAACCGATGCAAAGAAATCTTCATATGCAGTCAAGGTTGGCTTGGCTCAAATGCTTAGAGGGGGTGTTATCATGGACGTTGTCAACGCCGAACAGGCTAGGATAGCTGAAGAAGCTGGGGCTGCTGCTGTGATGGCATTGGAGCGAGTCCCTGCTGATATTAGATCTCAAGGGGGAGTGGCTCGGATGAGTGATCCTGGTCTCATCAAGGAAATTAAGCGTGCCGTGACCATCCCTGTCATGGCCAAGGCAAGAATAGGTCATTTCGTTGAAGCCCAAATCCTTGAGGCAATTGGTATTGATTACATTGATGAGAGTGAAGTGCTCACCGTTGCAGACGACATGCACCATATCAACAAACATAACTTCCGTGTACCGTTTGTCTGTGGATGCCGGAACCTTGGTGAGGCGCTGAGAAGGATTGCTGAAGGAGCTGCCATGATCAGGACTAAGGGTGAAGCTGGCACAGGCAATGTTATTGAAGCAGTAAGACATGTGAGGTCTGTTTTGGGTGATATACGGAAGCTTCAGAGCTTAGATGATGATGAGGTTTTTGCCTTTGCCAAACAAATCGCTGCTCCTTATGAGCTTGTGAGGCAAACCAAACAGCTAGGAAGGCTTCCTGTTGTGAATTTTGCAGCAGGAGGTGTTGCTACACCTGCTGATGCTGCTCTGATGATGCAGCTGGGCTGTGATGGAGTTTTTGTAGGCTCAGGTGTGTTCAAAAGCGGCGATCCAGCTCGTCGGGCTCGAGCAATTGTACAGGCTGTGACTCACTATAATGATTCCCATGTTCTGGCGGAGGTTAGTTGCGGTCTAGGAGAAGCTATGGTTGGAATTAATCTCAATGATGAGAAAGTGGAGCGATACGCAGAGAGATCGGAGTAA___AATCATGGAGATAGAATCCCTCTCATTTGATCGAATTTGTTACTTCATTTTGTATGGAAGCATAGCTCGTGCCTCGCTATTTAGTAACCTATTTATAGTTCTTATACTCATTCTATAAATTGATGATTATCACATTTTGGATGGATATTGAATTGGAAGAATTTGTAACCAATAATGAGGATCTGCCAAAAATGGCTTTCAGAGTTAATCTGTGAATGGGTCAGTGTAGCTCAATTACTCTATTTTCTTATCTCTATTACCAATATCCTCCATTTGACCAG

Fln Alignment:

sp_v1.1_unigene14663___MASDGVVTVYGNGPITDAKKSSYAVKVGLAQMLRGGVIMDVVNXXXXXXXXXXXXXXXXXXXRVPADIRSQGGVARMSDPGLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTVADDMHHINKHNFRVPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFXXXXXXXXXXXXLMMQLGCDXXXXXXXXXXXXDPARRARAIVQAVTHYNDSHVLAEVSCGLGEAMVGINLNDEKVERYAERSE
D5A8T3_______________MASDGVVTVYGNGAITDPKKSSYAVKVGLAQMLRGGVIMDVVNVEQAKIAEEAGATAVMALERVPADIRAQGGVARMSDPGLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTVADDMHHINKHNFRMPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHVLAEVSCDLGEAMVGINLNDEKVERYAERSE

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
177		33		66	0.997452
178			33	66	0.997452
185	33		66		0.997452
186	66	33			0.997452
189	66			33	0.997452
190			33	66	0.997452
191	66		33		0.997452
192	66	33			0.997452
194	66		33		0.997452
195	66			33	0.997452
196	66	33			0.997452
200	66	33			0.997452
201	33			66	0.997452
294			25	75	0.996473
295			75	25	0.996473
298	75			25	0.996473
299	75		25		0.996473
300	25			75	0.996473
309	66		33		0.997452
310	66			33	0.997452
314	66			33	0.997452
332	60		40		1.0
334		40		60	1.0
335		60	40		1.0
336		60		40	1.0
346		40	60		1.0
347			60	40	1.0
348		60	40		1.0
354		40		60	1.0
355	40	60			1.0
994		33		66	0.997452
995	66	33			0.997452
998		66		33	0.997452
1001	66	33			0.997452
1002	66			33	0.997452
1005		33		66	0.997452
1102		28		71	1.0
1105		28		71	1.0
1110	71	28			1.0
1111		28		71	1.0
1114			28	71	1.0
1117	71			28	1.0
1121			71	28	1.0
1122		28	71		1.0
1126		12		87	0.992554
1129		12		87	0.992554
1131		87		12	0.992554
1132			12	87	0.992554
1137		87		12	0.992554
1138		12		87	0.992554
1143	87			12	0.992554
1144		12		87	0.992554
1145	12		87		0.992554
1148		12	87		0.992554
1149	12	87			0.992554
1222		14		85	0.999981
1224			85	14	0.999981
1230	14		85		0.999981
1231	85	14			0.999981
1232			85	14	0.999981
1340		10	89		0.999919
1341	89			10	0.999919
1342		10	89		0.999919
1347	89			10	0.999919
1349			89	10	0.999919
1351	89			10	0.999919
1353	89	10			0.999919
1356			89	10	0.999919
1553		88	11		0.999937
1645		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain