SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14619

Length: 1392 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14619

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1675 domain containing protein	-	-	3.0e-07	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	protein	-	-	2.12877e-23	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	2.12877e-23	66%
Blast2go	protein binding	GO:0005515	Molecular Function	2.12877e-23	66%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	2.12877e-23	66%
Blast2go	nucleus	GO:0005634	Cellular Component	2.12877e-23	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 24 aas, your sequence is longer than subject: 308 - 143

Fln protein: MHYIPPSVDCLDRTGARPPIYPSGFQLPPGYTPFQLPTPDASPSWVPVMRPQQSPTFYPANFGGARTSSESVEDEAKVSQGVKRHDQQRKQFSLTTEDTFKHTISSLHRSDSLRNSQEEDTAPAHLLPVLGPQVLSSLSFSSGSSLAQPQTLSGTGKTQFFTEHGRVSAVRDSGDSISIGSATRECKKAVSIKSPRKDEAELKRNVNGSGIAFEAVQKDEGHAIGGPYMTSCLSQEVTALHPGLACGLKIGGNGTTPELPWVSTTGRGGKTICGVLYRYNANQVNVVCACHGRHMSSNDVTQHANQS*

Protein Length: 309

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGTCCTTCTCAGTTCTGCCCGCACCCTACTCTCTCCCCATTCCAGTACCTAACAATCGAAGTGTCCCATTTCCAGTAGGGTTCTCATTTCCTTACCTC_-_ATGCATTATATACCTCCATCTGTTGATTGTTTGGATCGTACTGGAGCTCGGCCTCCAATTTATCCAAGTGGCTTTCAGCTGCCTCCTGGCTATACACCATTTCAATTGCCAACACCTGACGCATCACCATCTTGGGTGCCAGTTATGCGTCCTCAGCAATCTCCAACCTTCTATCCAGCAAATTTTGGAGGTGCGAGGACTTCTTCAGAAAGTGTAGAGGATGAAGCAAAAGTTTCTCAAGGAGTAAAAAGACATGACCAACAAAGGAAACAATTTTCCTTAACAACAGAGGATACATTTAAACACACTATCTCTTCACTACATAGGTCAGATTCATTGCGTAATAGTCAAGAAGAAGATACAGCACCTGCACACTTACTACCAGTGTTAGGTCCCCAAGTCCTATCAAGTCTTTCATTTTCATCAGGTTCTTCACTTGCCCAACCACAAACACTCTCTGGCACAGGGAAAACACAGTTCTTCACTGAACATGGTAGAGTTTCTGCAGTGAGGGATTCTGGAGATTCAATTTCCATTGGATCAGCAACACGTGAATGCAAAAAAGCAGTGTCAATAAAATCTCCAAGAAAAGATGAAGCAGAATTAAAAAGAAATGTAAATGGGAGTGGCATAGCTTTTGAGGCTGTCCAGAAGGACGAAGGACATGCCATTGGAGGGCCTTACATGACAAGTTGTCTTTCTCAAGAAGTTACGGCTTTACACCCTGGTTTAGCATGCGGATTGAAGATCGGGGGTAATGGCACAACACCAGAGCTACCGTGGGTATCAACAACTGGGCGCGGTGGAAAGACAATATGTGGTGTACTATACAGGTATAATGCAAACCAAGTTAATGTAGTGTGTGCCTGCCATGGAAGGCACATGTCATCTAACGACGTGACACAGCATGCAAATCAATCGTAG___GACCTTCAAACACACAGATGAAAAATGCTGTTAACCCTTACACTGTCGACAGCCCAGCAGCATCTGCACAGGGGTAAATTGAATGGGAGAATAATAGCATGGGAAAAATAGCTGCAGATTTAGACCTGCGAATATGTTTTTGCTGCATAATCAATCCAAAACTTCAGACCATTTAGGTGAAGCAACTAACTTAAATACCATCTCTATGTTCTATGCCATGTGAAACGTGGCATCTGGATACAGTGATTTTTTAATCCAAGATGGGATTCTCATGGTTGTTTGGAGACTTGTGGGTATCTTCCGCATCAAGAATTTCGAAACATTTTAAATTCTCTGCTAATGATGAG

Fln Alignment:

sp_v1.1_unigene14619___KDEAELKR---NVNGSGIAFEAVQKDEGHAIGGPYM--TSCLSQEVTALHPGLACGLKIGGNGTTPELPWVSTTGRG--GKTICGVLYRYNANQVNVVCACHGRHMSSNDVTQHA
A9NZJ6_______________KEEQQLERTGSDVGGTSLYSKAVDDDAKGHVGADHLPITEGVSQEIWNLRPGIAPGLKFGGTGNSPDLPWVTTSGIGPNGKTISGVMYRYNRNQVKIVCACHGRHMSPSEFVQHA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
695	80		20		0.995493
696	80		20		0.995493
697	80		20		0.995493
955		20		80	0.995493
958	80	20			0.995493
959		80	20		0.995493
961	80		20		0.995493
962	20			80	0.995493
963	80	20			0.995493
965	80			20	0.995493
966			80	20	0.995493
968			25	75	0.996473
969	75	25			0.996473
972	75		25		0.996473
977	75	25			0.996473
978	75			25	0.996473
980	25	75			0.996473
1001		20		80	0.995493
1003		80		20	0.995493
1005	80		20		0.995493
1010	80	20			0.995493
1011		20	80		0.995493
1012			80	20	0.995493
1013		80		20	0.995493
1014	80		20		0.995493
1015		80	20		0.995493
1016	80	20			0.995493
1025	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain