SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14583

Length: 904 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14583

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	geranylgeranyl transferase type I beta subunit, putative (EC:2.5.1.60); K11713 geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	protein	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
AutoFact	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	68%
Blast2go	response to water deprivation	GO:0009414	Biological Process	68%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	68%
Blast2go		GO:0018348	Biological Process	68%
Blast2go	CAAX-protein geranylgeranyltransferase activity	GO:0004662	Molecular Function	68%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	68%
Blast2go	CAAX-protein geranylgeranyltransferase complex	GO:0005953	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prenyltransferase/squalene oxidase	IPR001330	-	0.0	68%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	0.0	68%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
478	50	50			1.0
480	50			50	1.0
484		50	50		1.0
486		50		50	1.0
490	50	50			1.0
494	50	50			1.0
496	50	50			1.0
499	50	50			1.0
773			12	87	0.992554
866		83	16		0.999991
868	25		75		1.0
895	10		90		0.90298
911	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain