SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14024

Length: 339 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene14024
CGTCGTGACCTTGGCTGTCACTCAGTCATTATCAATAGAAGGGATCATTCTCTCTTTGCTGCTCTGTCCGCCAGAGTCTCTACCGCCTCGGCCTCAGGGGAAAACTCCTTAATGGCTCCCACTGATACGAATGGAGATCACAATGGCGAGAGTGTCAGCGCCGCCAATGTTAACGCAATGAGGGAAGAAGTACATTACAGAGGAGTGAGAAAAAGGCCATGGGGTAGATATGCGGCAGAGATCAGAGATCCAATCATCAAGAAGCGAAGGTGGCTTGGCACCTTCAATACAAGCGAGGAAGCGGCGAAGGCGTACGATAAGGCGGCAAGACGTTTAAAA

Ace file of the UniGene sp_v1.1_unigene14024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HGP8_POPTR	-	-	2.0e-19	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	ap2 erf domain-containing transcription factor	-	-	4.59188e-19	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	4.59188e-19	73%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	4.59188e-19	73%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	4.59188e-19	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	4.59188e-19	73%
Blast2go	nucleus	GO:0005634	Cellular Component	4.59188e-19	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	4.59188e-19	73%
Blast2go	DNA-binding, integrase-type	IPR016177	-	4.59188e-19	73%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMP1

Fln msg: Distance to subject end: 136 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 113 - 225

Fln protein: RRDLGCHSVIINRRDHSLFAALSARVSTASASGENSLMAPTDTNGDHNGESVSAANVNAMREEVHYRGVRKRPWGRYAAEIRDPIIKKRRWLGTFNTSEEAAKAYDKAARRLK

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCATTATCAATAGAAGGGATCATTCTCTCTTTGCTGCTCTGTCCGCCAGAGTCTCTACCGCCTCGGCCTCAGGGGAAAACTCCTTAATGGCTCCCACTGATACGAATGGAGATCACAATGGCGAGAGTGTCAGCGCCGCCAATGTTAACGCAATGAGGGAAGAAGTACATTACAGAGGAGTGAGAAAAAGGCCATGGGGTAGATATGCGGCAGAGATCAGAGATCCAATCATCAAGAAGCGAAGGTGGCTTGGCACCTTCAATACAAGCGAGGAAGCGGCGAAGGCGTACGATAAGGCGGCAAGACGTTTAAAA

Fln Alignment:

sp_v1.1_unigene14024___LSARVSTASASGENSLMAPTDTNGDHNGESVSAANVNAMREEVHYRGVRKRPWGRYAAEIRDPIIKKRRWLGTFNTSEEAAKAYDKAARRLK
A9NMP1_______________MCAEVSQSAMAVHTMQMARMEMKRDIGVCEVEASSAV---KETHFRGVRKRPWGRFAAEIRDPLKKTRVWLGTFDTAEEAARAYDNAARNLR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
162	55	44			1.0
165	22	77			0.999999
166		77	22		0.999999
170	33		66		1.0
172		50		50	1.0
175		87		12	0.992554
176	37		62		1.0
180		50		50	1.0
183	12		87		0.992554
184			50	50	1.0
193	50		50		1.0
216	42		57		1.0
233	42		57		1.0
235		42	57		1.0
292	60		40		1.0
303		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain