SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13788

Length: 1308 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13788

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9H7V1_POPTR	-	-	1.0e-34	70%
FL-Next	sp=Histone-lysine N-methyltransferase ASHH1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Blast2go	set domain protein	-	-	1.8891e-34	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	1.8891e-34	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		1.8891e-34	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone methylation	GO:0016571	Biological Process	1.8891e-34	77%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	1.8891e-34	77%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	1.8891e-34	77%
Blast2go	nucleus	GO:0005634	Cellular Component	1.8891e-34	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Post-SET domain	IPR003616	-	1.8891e-34	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q84WW6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 188 aas, putative chimeric sequence, your sequence is shorter than subject: 132 - 492

Fln protein: ETRKWTVRRDLGCHSIFAKRDIPCGTELSYDYKFEWYGGAKVRCLCGAPSCFGFLGAKSRGFQNDAYLWEDNDERYSVENVPLYDSDDDEPLSNFLKRAKVCKKLKNAAAKRHSISQPAGELVRISCDSIS*

Protein Length: 133

Fln nts: TGAAACTCGAAAGTGGACAGTCCGTCGTGACCTTGGCTGTCACTCAATTTTTGCAAAGCGGGACATCCCTTGTGGTACAGAGTTATCATATGATTATAAGTTTGAGTGGTATGGTGGTGCCAAGGTTCGATGTCTATGTGGAGCACCATCTTGTTTTGGATTTCTTGGGGCAAAGTCTCGTGGTTTTCAGAATGATGCTTATCTATGGGAAGACAATGATGAAAGGTACTCCGTAGAAAATGTCCCACTTTATGACTCTGATGACGATGAACCACTGTCCAATTTCCTGAAACGGGCAAAGGTGTGCAAGAAACTAAAAAATGCAGCTGCAAAAAGGCATTCTATTTCTCAACCTGCAGGTGAATTAGTAAGAATCAGCTGCGATTCCATTTCATAA___TACTGTCAATGAAAAGAAAGAGAACAACTCTTCTGATGTCTCAGTAAGTAAGGAGAAGTTGTCATTGCTGGATTTGGCAGAAACTGCAATTTCTTATGCGAAACAGGAAATGATAAATGGGGCATTAGATCAGAATGAGGTGGCCATTGAAAAGGAAGGAGCTATTGAATCAACACCAGATGGAATGAAAGTTGATACAGAAAACAGTGACCAATGTCCTATGAGTAAGGATGCAAGAGTATCTGAAAGTGAATCTGCCAATGTAGCTTTGGATTACCCTTCAGATCCACAGATTGTTTTGCCAAGTAAGAAATCTTTATATTTTTCATGTCAGAAATCGAAGCATTTCGTGAATAAACGGGTCAGTGCAGAGTTCATTAATCAGATTTTACCTTCAAAGGAAGCACGTGAAGAAGTTTTGGAAGCAGAGCAAGCAAAGAGTGCTGCAACAGAGGAATTGAGTTCTTTTTATGATAAAATAAGGCCAGTGATTCAGGAGCATGGGAAGGATGGTCAGGATAGTGTGCCGACCAGTTTAGCAGAGGAGTGGATTAAAGCAACTTGTGGACAACTAAAAGCTACTTTTGATGCACACTACTCTATTATGAAGCATACATCAAACAATCTTCGAGGTGCACATGGTGCAGTTCTCAACATGCAGGGAGACCAAGCAAACTTCCTTGACAGGAAGGACTAGATGTTTCTGAATTATATCCTGAATTTTGTACAAAGGCAATATGATTGAAAGCAGAGGTTGTTGGCCCAGTGTGGTCATGATAATGTGCCAATTTTGTGCCATCATGCCATGCTTTGTCAATGTAAAATCTTGCTATGTCCAAAGCAGCATGAGAAAGCTGCATATTCATTGCATGATTGTATTGACAAATATTTAAAGAATTCTTTGTCCTCAC

Fln Alignment:

sp_v1.1_unigene13788___ETRKWTVRRDLGCHSIFAKRDIPCGTELSYDYKFEWYGGAKVRCLCGAPSCFGFLGAKSRGFQNDAYLWEDNDERYSVENVPLYDSDDDE
Q84WW6_______________ETRKWNVLGEVRV-GIFAKESISPRTELAYDYNFEWYGGAKVRCLCGAVACSGFLGAKSRGFQEDTYVWEDGDDRYSVDKIPVYDSAEDE

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
265		50	50		1.0
483		88		11	0.923564
484	88		11		0.923564
486		11		88	0.923564
487		11		88	0.923564
489		88		11	0.923564
490			11	88	0.923564
491			11	88	0.923564
492	77	11	11		0.968132
495		88		11	0.923564
496		11	88		0.923564
498	88	11			0.923564
499	88			11	0.923564
696	16			83	0.994512
722		20		80	0.995493
723		80		20	0.995493
742	14			85	0.993533
743			14	14	0.984337
744			14	85	0.993533
745			14	85	0.993533
753	85		14		0.993533
757			85	14	0.993533
758		14	85		0.993533
759			85	14	0.993533
760			14	85	0.993533
763		14	85		0.993533
831	40		60		1.0
836			83	16	0.994512
837	83		16		0.994512
839			16	83	0.994512
974	76	11		11	0.999894
980		11		88	0.999952
983			11	88	0.999952
985	88	11			0.999952
991	88			11	0.999952
1264		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain