SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13616

Length: 2020 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13616
AGGAAAACAATGCCTATTAGGGCAGCGCATACATTGAATGTATTCACTGGTTACAGAAACCATGTCCGGGTCTGGAATTTAGATTAGATTGTACATGCAGTTCAATCAATTCCATCGTCTTCATTTATGTGTGCACGCTAAGTTCCAACGATACAGTCCTTTGAAGCACGTGGAAAGAAACTCGGTCTCTGCAGTGGACATAAACCCTAGTGAGTTTTAGGGTTTCATGTAGAGAAGGATTGAAATCTGTTGGCGATGGGATCCTTGGATGAATCCACTTGCAGCGAAGAGATCAGAGATGAAGGCAAGGATTCAATTAGGACTAAATTTAAAGTCGAGTCCACTGTAAATAATGTACAAAACGGAGGCAATGACAATTCAAAGAAGAAAAGAGCGGCCGGCCTTCCCCTGGAAGTTGGCATTCGTCTCCTTTGCAAGTGGAGGGATTCGAAACTGCACCCTGTTAAAATCATTGAGCGTCGTAAGCTTCCTAATGGGTTTCCTCAAGATTACGAGTATTACGTTCACTACACTGAATTCAATAGAAGGCCTGATGAGTGGGTGAAACTTGAGCAATTTGAACTTGATTCTGTGGAGACTGATGCTGATGAGAAAATTGAGGACAAGGGAGGAAGCTTGAAAATGACTCGCCACCAGAAACGCAAAATTGATGAAATCCACGTTGAAGAGGGTCAGGGTCATGAGGATTTTGATCCTGCTAGCCTTCGAGAGCATGAAGAGTTTACGAAAGTTAAGAACATAGCAAAGGTAGAGCTTGGGAGGTATGAGATTGAGACGTGGTACTTTTCACCTTTCCCTCCTGAATACAGCCATTGTGAGAAGTTATTCTTTTGCGAATTTTGTCTCAATTTCATGAAGAGGAAAGAACAGCTTCAAAGACATATGAGGAAGTGCGATCTAAAGCATCCACCTGGAGATGAAATATATCGCAATGGAACCCTCTCCATGTTTGAGGTTGATGGAAAGAAGAACAAGATATATGGGCAGAACCTCTGCTATCTGGCAAAGTTATTCCTCGATCACAAGACACTTTATTATGATGTTGATTTGTTCCTTTTTTACGTTCTTTGTGAATGCGATGATCGTGGATGCCATGTTGTGGGATACTTTTCAAAGGAGAAGCATTCTGATGAAGCATATAATTTGGCCTGCATTCTTACTCTTCCCCCATATCAGAGAAAAGGATATGGAAAGTTCCTCATAGCTTTTTTCATATGAATTGTCCAAAAAAGAAGGGAAGGTTGGGACCCCAGAGCGCCCTCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTGGGCTGGAAATTGATGTATCTAAGCTTATCTGGACTCCCTACAAAGAGCAATGTGGATGATTAAATTTTTTAGACATGTTTCTTCATGGTTATACTGAGCGAAATGATAAAATCTAGCAATTTCATGCTTTTTTGCATCCTTTGGAAAGGTAGCTAGAGAAAATTGCTCCTGGTGAAGAGGCAGTTGTATATTTGTTTCCATGGTGGTTTTGATATTCTTTTTCAAATCTGAGAACATCTCTTACTCATTATTGCGAAAGTTTAAGGTTTCATCATGCATCCCTGCGTGCAACAAGTTGTGATAATTTAAGGCTGAATGAACAGCATTCCAGCACACAAGTGTCACTTGAAGAAATTCATCAATTCTTTGAAATTATTGTTCCCTTTAATGCGGCCCCTTTCTGGAGGGGCAATCAATGTCTGCGTTGCCACTCTTTTGATGAGGATTGTAAAGGAACGGTACCTTTGCCAATAAAGTAATNAAAATTTTCTAACGAG

Ace file of the UniGene sp_v1.1_unigene13616

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HAM1501; histone acetyltransferase; K11308 histone acetyltransferase MYST1 [EC:2.3.1.48]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	histone acetyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	85%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	85%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	85%
Blast2go	chromatin binding	GO:0003682	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chromatin	GO:0000785	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	MOZ/SAS-like protein	IPR002717	-	85%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	85%
Blast2go	Chromo domain-like	IPR016197	-	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX9

Fln msg: Overlapping hits, possible frame ERROR between 1281 and 1256, Unexpected STOP codon in 5 prime region,

Fln protein: MGSLDESTCSEEIRDEGKDSIRTKFKVESTVNNVQNGGNDNSKKKRAAGLPLEVGIRLLCKWRDSKLHPVKIIERRKLPNGFPQDYEYYVHYTEFNRRPDEWVKLEQFELDSVETDADEKIEDKGGSLKMTRHQKRKIDEIHVEEGQGHEDFDPASLREHEEFTKVKNIAKVELGRYEIETWYFSPFPPEYSHCEKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRNGTLSMFEVDGKKNKIYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHVVGYFSKEKHSDEAYNLACILTLPPYQRKGYGKFLIAFFI*IVQKRxxxxxxxxxxLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIAGLEIDVSKLIWTPYKEQCG*

Protein Length: 444

Fln nts: AGGAAAACAATGCCTATTAGGGCAGCGCATACATTGAATGTATTCACTGGTTACAGAAACCATGTCCGGGTCTGGAATTTAGATTAGATTGTACATGCAGTTCAATCAATTCCATCGTCTTCATTTATGTGTGCACGCTAAGTTCCAACGATACAGTCCTTTGAAGCACGTGGAAAGAAACTCGGTCTCTGCAGTGGACATAAACCCTAGTGAGTTTTAGGGTTTCATGTAGAGAAGGATTGAAATCTGTTGGCG_-_ATGGGATCCTTGGATGAATCCACTTGCAGCGAAGAGATCAGAGATGAAGGCAAGGATTCAATTAGGACTAAATTTAAAGTCGAGTCCACTGTAAATAATGTACAAAACGGAGGCAATGACAATTCAAAGAAGAAAAGAGCGGCCGGCCTTCCCCTGGAAGTTGGCATTCGTCTCCTTTGCAAGTGGAGGGATTCGAAACTGCACCCTGTTAAAATCATTGAGCGTCGTAAGCTTCCTAATGGGTTTCCTCAAGATTACGAGTATTACGTTCACTACACTGAATTCAATAGAAGGCCTGATGAGTGGGTGAAACTTGAGCAATTTGAACTTGATTCTGTGGAGACTGATGCTGATGAGAAAATTGAGGACAAGGGAGGAAGCTTGAAAATGACTCGCCACCAGAAACGCAAAATTGATGAAATCCACGTTGAAGAGGGTCAGGGTCATGAGGATTTTGATCCTGCTAGCCTTCGAGAGCATGAAGAGTTTACGAAAGTTAAGAACATAGCAAAGGTAGAGCTTGGGAGGTATGAGATTGAGACGTGGTACTTTTCACCTTTCCCTCCTGAATACAGCCATTGTGAGAAGTTATTCTTTTGCGAATTTTGTCTCAATTTCATGAAGAGGAAAGAACAGCTTCAAAGACATATGAGGAAGTGCGATCTAAAGCATCCACCTGGAGATGAAATATATCGCAATGGAACCCTCTCCATGTTTGAGGTTGATGGAAAGAAGAACAAGATATATGGGCAGAACCTCTGCTATCTGGCAAAGTTATTCCTCGATCACAAGACACTTTATTATGATGTTGATTTGTTCCTTTTTTACGTTCTTTGTGAATGCGATGATCGTGGATGCCATGTTGTGGGATACTTTTCAAAGGAGAAGCATTCTGATGAAGCATATAATTTGGCCTGCATTCTTACTCTTCCCCCATATCAGAGAAAAGGATATGGAAAGTTCCTCATAGCTTTTTTCATATGAATTGTCCAAAAAAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTGGGCTGGAAATTGATGTATCTAAGCTTATCTGGACTCCCTACAAAGAGCAATGTGGATGA___TTAAATTTTTTAGACATGTTTCTTCATGGTTATACTGAGCGAAATGATAAAATCTAGCAATTTCATGCTTTTTTGCATCCTTTGGAAAGGTAGCTAGAGAAAATTGCTCCTGGTGAAGAGGCAGTTGTATATTTGTTTCCATGGTGGTTTTGATATTCTTTTTCAAATCTGAGAACATCTCTTACTCATTATTGCGAAAGTTTAAGGTTTCATCATGCATCCCTGCGTGCAACAAGTTGTGATAATTTAAGGCTGAATGAACAGCATTCCAGCACACAAGTGTCACTTGAAGAAATTCATCAATTCTTTGAAATTATTGTTCCCTTTAATGCGGCCCCTTTCTGGAGGGGCAATCAATGTCTGCGTTGCCACTCTTTTGATGAGGATTGTAAAGGAACGGTACCTTTGCCAATAAAGTAATaAAAATTTTCTAACGAG

Fln Alignment:

sp_v1.1_unigene13616___TKFKVESTVNNVQNGGNDNSKKKRAAGLPLEVGIRLLCKWRDSKLHPVKIIERRKLPNGFPQDYEYYVHYTEFNRRPDEWVKLEQFELDSVETDADEKIEDKGGSLKMTRHQKRKIDEIHVEEGQGHEDFDPASLREHEEFTKVKNIAKVELGRYEIETWYFSPFPPEYSHCEKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRNGTLSMFEVDGKKNKIYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHVVGYFSKEKHSDEAYNLACILTLPPYQRKGYGKFLIAFFI*IVQKRxxxxxxxxxLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIAGLEIDVSKLIWTPYKEQ
A9NUX9_______________TNVKVETP----SSPDHDLVRKRKLGFLPLEVGTRVLCKWRDGKFHPVKIIERRKLPNGTTNDYEYYVHYTEFNRRLDEWVKLEQLELDSVETDADEKVDDKAGSLKMTRHQKRKIDETHVE---GNEELDAASLREHEEFTKVKNITKIELGRYEIETWYFSPFPAEYNSCEKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYILCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLISFSYELSKKExxxxxxxxxLSDLGLLSYRGYWTRVLLDILKKHKNNISIKELSDMTAIKAEDVLSTLQGLDLIQYRKGQHAICADPKVLDRHLKAVGRGGLEVDVCKLIWTPYKEQ

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
30	75		25		0.996473
35	75	25			0.996473
39	75		25		0.996473
40	75	25			0.996473
46		25		75	0.996473
751	33		66		0.997452
772			75	25	0.996473
774			25	75	0.996473
775	75		25		0.996473
926	80		20		0.995493
1000	83		16		0.994512
1361	66		33		0.997452
1600	90			10	0.90298
1602	90		10		0.90298
1604	90	10			0.90298
1608			10	90	0.90298
1609			10	90	0.90298
1616		10	90		0.90298
1617	10		90		0.90298
1622	90		10		0.90298
1686	87		12		0.999964
1949		66		33	0.997452
1961			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain