SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13023

Length: 998 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13023

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative (EC:2.3.1.48)	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	mRNA processing	GO:0006397	Biological Process	82%
Blast2go	regulation of flower development	GO:0009909	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	82%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	82%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	82%
Blast2go	WD40-repeat-containing domain	IPR017986	-	82%
Blast2go	WD40 repeat, subgroup	IPR019781	-	82%
Blast2go	WD40 repeat 2	IPR019782	-	82%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
743	87		12		0.992554
747		12		87	0.992554
748		12	87		0.992554
749	87			12	0.992554
751		87	12		0.992554
753	87			12	0.992554
754	87		12		0.992554
756		12		87	0.992554
759		12	87		0.992554
762	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain