SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12954

Length: 361 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene12954
AAATGTATCAAAGAGCAAGCACTTGCAGAGCCGTTGGTGGACGTTGCGGAAGCGAAGCAAGTGATGACCAACGCAGTTGCGGTCCTAGATGTGGATATCTACACTGTGAAAAAAGAAGATCTCGATTTCAATAGCACATATGAGCTTACTGTATCACGGGATGACTATTGCCACGCATTTCTTGCATACTTCACTGTCGAATTTTCCAAGTGCCACAAGAAGGTGTCGTTTTCGACGGGACCGCGCGCAGAGCGAACTCACTGGAAGCAAGTGGTTTTCTACTTGGAGCAACCGCTCACCTGCACTGCGGGGGAAAAGGTTTCTGGGACAATCAAAGTGTCTCGCAACCCACAGAATCCTA

Ace file of the UniGene sp_v1.1_unigene12954 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to HMT1 hnRNP methyltransferase-like 3 protein, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001555011	-	-	5.0e-33	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	protein arginine n-methyltransferase 8-like	-	-	9.58574e-33	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	9.58574e-33	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone methylation	GO:0016571	Biological Process	9.58574e-33	71%
Blast2go	regulation of protein binding	GO:0043393	Biological Process	9.58574e-33	71%
Blast2go	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	GO:0019919	Biological Process	9.58574e-33	71%
Blast2go	protein-arginine omega-N asymmetric methyltransferase activity	GO:0035242	Molecular Function	9.58574e-33	71%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	9.58574e-33	71%
Blast2go	protein-arginine omega-N monomethyltransferase activity	GO:0035241	Molecular Function	9.58574e-33	71%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	9.58574e-33	71%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	9.58574e-33	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.58574e-33	71%
Blast2go	nucleus	GO:0005634	Cellular Component	9.58574e-33	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Skb1 methyltransferase	IPR007857	-	9.58574e-33	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 120 - 379

Fln protein: KCIKEQALAEPLVDVAEAKQVMTNAVAVLDVDIYTVKKEDLDFNSTYELTVSRDDYCHAFLAYFTVEFSKCHKKVSFSTGPRAERTHWKQVVFYLEQPLTCTAGEKVSGTIKVSRNPQNP

Protein Length: 121

Fln nts: AAATGTATCAAAGAGCAAGCACTTGCAGAGCCGTTGGTGGACGTTGCGGAAGCGAAGCAAGTGATGACCAACGCAGTTGCGGTCCTAGATGTGGATATCTACACTGTGAAAAAAGAAGATCTCGATTTCAATAGCACATATGAGCTTACTGTATCACGGGATGACTATTGCCACGCATTTCTTGCATACTTCACTGTCGAATTTTCCAAGTGCCACAAGAAGGTGTCGTTTTCGACGGGACCGCGCGCAGAGCGAACTCACTGGAAGCAAGTGGTTTTCTACTTGGAGCAACCGCTCACCTGCACTGCGGGGGAAAAGGTTTCTGGGACAATCAAAGTGTCTCGCAACCCACAGAATCCTA

Fln Alignment:

sp_v1.1_unigene12954___CIKEQALAEPLVDVAEAKQVMTNAVAVLDVDIYTVKKEDLDFNSTYELTVSRDDYCHAFLAYFTVEFSKCHKKVSFSTGPRAERTHWKQVVFYLEQPLTCTAGEKVSGTIKVSRNPQNP
A9NV48_______________CIKKQAMLEPLVDTVDRNQIVTNCQSLKTMDISKMKPGDASFTASFKLVAERNDYIHALVAYFDVAFTNCHKVTGFSTGPKSRATHWKQTVLYLEDVITICEGEALVGSMTIAQNSKNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain