SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12637

Length: 1708 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12637 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	wd-repeat	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	80%
Blast2go		GO:0016481	Biological Process	80%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	80%
Blast2go	transferase activity	GO:0016740	Molecular Function	80%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	80%
Blast2go	Coatomer, WD associated region	IPR006692	-	80%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	80%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	80%
Blast2go	WD40-repeat-containing domain	IPR017986	-	80%
Blast2go	WD40 repeat, conserved site	IPR019775	-	80%
Blast2go	WD40 repeat, subgroup	IPR019781	-	80%
Blast2go	WD40 repeat 2	IPR019782	-	80%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 363 - 314

Fln protein: MAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTFKGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKPVHSVCWDTSGEYLASVSEDSVRVWSFRSGKEGECVHELSCSGNKFHSCVFHPSYPKLLVIGCYQSLELWNMAENRSMTLPAHDGLIAALAVSNATGMVASASHDKCVKLWK*

Protein Length: 364

Fln nts: TGAATAATGCTGGCCCTTCCCAAAGTTCTGCACCCTCAACGCCATCTACTCAGACACCTGGTGATGTGTTGTCT_-_ATGGCGGGTGCATTGCAGCACAGTGCTAGCTCATCAAAGCCTCTACTTATGTATGGATCAGATGGGACACTTGCTTCCCCATCGAACCAATTGGTTGATATGGATCGCTTTGGGGAGGATGGATCGTTGGATGACAATGTGGAGTCATTTTTGCATGATGATACAGATCTAAGAGATCCAGCTGGGAGATGCATGGATGTCACTAAAGGGTTCTCCTTTAGTGAGTTTGGTTGTCTTCGAGCTAGTACGAGTAAAGTTGTATGCTGCCACTTCTCTTCTGATGGTAAATTACTAGCCAGTGCTGGACATGAGAAGAAGGCAGTGCTGTGGAATATGGAGACACTGGGAGTTGAGAGTACCCTTGAAGAGCATAACTTATTAATTACTGATGTGCGTTTCAGTCCCAACTCAGCTCGCTTGGCGACATCATCATTCGATAAAACAGTCAGGGTTTGGGATGCAGATAATCCAAGCTATTCATTGAGAACGTTTACTGGTCATTTAGGAACTGTTATGTCTCTTGATTTCCATCCAAACAATGATCTTCTCTGCTCTTGTGATGGAGAAAATGAAATGCGTTATTGGAGTGTTAATCAGGGCATTTGCACAAGAACTTTTAAGGGTGGTATGAGTCAAGTCCGATTTCAAACAGGAGCTGGTAGACTTCTTGCAGCTGCTGCAGAAAATGTTGTATCAATTTTTGATGTTGAGAGTGAGCACCGTTTGCATTCTTTACAGAGGCATACAAAGCCTGTACACTCAGTTTGCTGGGATACAAGTGGAGAATATTTGGCGTCTGTAAGTGAGGATTCTGTTAGGGTATGGTCTTTTCGTTCTGGAAAAGAAGGTGAATGTGTACATGAACTGAGCTGTAGTGGAAATAAATTCCATTCATGTGTCTTTCATCCAAGCTATCCAAAACTTTTGGTAATTGGATGCTATCAGTCATTGGAGCTATGGAATATGGCAGAAAACAGGAGTATGACCCTCCCTGCACACGATGGCCTCATAGCCGCATTGGCAGTTTCCAATGCAACTGGCATGGTTGCTTCTGCGAGTCATGATAAATGTGTAAAATTGTGGAAGTGAATGGCCTGATATAAATCAAAAAACCTTTATTCCCAGGTTGTTGGTTGTTAATGCAATCGTTTTGATCAGAACAATGGTGAGCCTCACATATTTGTTGCTTATTTTGTTTTTAGAGTAATAATTACTCTAATTATCTGTAAATTAATAATCTTCCATAATTTATATGTAAATTTCCTGCCTGCCAACATTTTTTTTCTTCTGAAAATTCATTTCTTAAAGTGCATTGTCTCTTGGAGATTTGCATCTAATCAGTTGTTCCTGTGTTAGTGTTTTACTCTAGAGGTTTTAGTTGTGATTCTTGATCCTCGTAGAGTTGATACTAGATGTAATTGCATACTTTGAGCAAGAAGCCTGCATGTGGCTTTTCCTGATAAGTTGCAACAAGCTTGATGCCTTTTTTTCTTCTTCTGACGTTTCTTGAAATGCTCCCAAATGGATGGTGGGGGGTACATGTGATCTTTTGTATACATAGCAAAAACACTAAGCTGGTAAATATTCATCATAGATATAAACTGTACTTTTGCTTCGGTTGTATTTGTAATAAC

Fln Alignment:

sp_v1.1_unigene12637___MAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTF----KGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKP---VHSVCWDTSGEYLASVSEDS-VRVWSFRS
A9NPC1_______________MASEAQGSGNSFKPYKLKH----ILTGHKRAVSSVKFSADGKLLGSASA---------DKSVRIWSAGDGSAKRE---LQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDV-RTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
222		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain