SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12492

Length: 1136 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12492 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3735 domain containing protein	-	-	3.0e-22	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	gtg1 (gpcr-type g protein 1)	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	87%
Blast2go	GTP binding	GO:0005525	Molecular Function	87%
Blast2go	GTPase binding	GO:0051020	Molecular Function	87%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	87%
Blast2go	microsome	GO:0005792	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GPCR 89-related	IPR015672	-	0.0	87%
Blast2go	Golgi pH regulator, conserved domain	IPR022535	-	0.0	87%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
191		40		60	1.0
192	25			75	0.996473
720	71		28		1.0
762	42		57		1.0
791	83	16			0.994512
944			66	33	0.997452
1025	60			40	1.0
1029		40		60	1.0
1031		40	60		1.0
1039	60		40		1.0
1052	60	40			1.0
1066	76		23		1.0
1084	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain