SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12480

Length: 789 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12480

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	66%
Blast2go	global transcription factor group	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription from RNA polymerase II promoter	GO:0006357	Biological Process	76%
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	76%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	76%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	76%
Blast2go	transcription elongation regulator activity	GO:0003711	Molecular Function	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tex RuvX-like domain	IPR023097	-	0.0	76%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
150	66			33	0.997452
171	66		33		0.997452
180	66		33		0.997452
240	80		20		0.995493
273		20		80	0.995493
361		75		25	0.996473
376	50		50		1.0
383		50		50	1.0
388	50			50	1.0
391	50		50		1.0
407			50	50	1.0
412	50		50		1.0
415	50		50		1.0
439	28			71	1.0
441	28	42	28		1.0
442			28	71	1.0
443			28	71	1.0
454		28	71		1.0
643			14	85	0.993533
670	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain