SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11922

Length: 1021 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11922

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sentrin/sumo-specific protease, putative n=1 Tax=Ricinus communis RepID=B9SH87_RICCO	-	-	3.0e-32	63%
FL-Next	sp=Ubiquitin-like-specific protease 1D; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	cysteine-type peptidase	-	-	6.07813e-32	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein desumoylation	GO:0016926	Biological Process	6.07813e-32	70%
Blast2go	proteolysis	GO:0006508	Biological Process	6.07813e-32	70%
Blast2go	response to salt stress	GO:0009651	Biological Process	6.07813e-32	70%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	6.07813e-32	70%
Blast2go	SUMO-specific protease activity	GO:0016929	Molecular Function	6.07813e-32	70%
Blast2go	nucleus	GO:0005634	Cellular Component	6.07813e-32	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	6.07813e-32	70%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
395	33			66	1.0
397	66		33		1.0
398			33	66	1.0
399			33	66	1.0
443	88		11		0.923564
445		11		88	0.923564
446			11	88	0.923564
450	88	11			0.923564
451		11	88		0.923564
452	88			11	0.923564
453	88			11	0.923564
456	88		11		0.923564
458		88		11	0.923564
459			11	88	0.923564
774	78		21		1.0
962		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain