SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11894

Length: 888 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11894 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc finger protein n=2 Tax=Arabidopsis RepID=Q9STM3_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	zinc finger protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of histone acetylation	GO:0035067	Biological Process	75%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	75%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	75%
Blast2go	histone H3-K9 demethylation	GO:0033169	Biological Process	75%
Blast2go	leaf development	GO:0048366	Biological Process	75%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	75%
Blast2go	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	75%
Blast2go	Zinc finger, C2H2-like	IPR015880	-	75%

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
382	20	80			0.995493
502		77	22		0.999999
503	22	77			0.999999
506			33	66	1.0
507	33			66	1.0
508		88	11		0.923564
509	22	66		11	0.999999
510		66	33		1.0
511	77	22			0.999999
514	25		12	62	1.0
515		75	25		1.0
516		75	25		1.0
517	12			87	0.992554
518	12	25		62	1.0
519	25		12	62	1.0
520	62	25	12		1.0
521			25	75	1.0
522	87	12			0.992554
523	75	25			1.0
525		16		83	0.994512
529	83	16			0.994512
623		14		85	0.993533
670		83	16		0.994512
671	16			83	0.994512
672			16	83	0.994512
675			16	83	0.994512
676	16			83	0.994512
678	20	20			0.99255
679		16	83		0.994512
680	83	16			0.994512
681		16		83	0.994512
682	20		80		0.995493
686		20	80		0.995493
687	20			80	0.995493
688		20	80		0.995493
690	20		80		0.995493
695	14		71		0.984337
699	28			71	1.0
701	14			85	0.993533
703	28		71		1.0
704	71	28			1.0
709	42			57	1.0
710	42			57	1.0
712			42	57	1.0
713		57		42	1.0
717	57		42		1.0
718	42			57	1.0
720			42	57	1.0
790	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain