SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11098

Length: 1439 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11098

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRMT6; PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase; K11437 protein arginine N-methyltransferase 6 [EC:2.1.1.-]	-	-	7.0e-26	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	protein arginine n-	-	-	2.80728e-26	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	2.80728e-26	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	7.0e-26	68%

Source	KEGGs	Term	e value	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	7.0e-26	68%
AutoFact	Tetracycline biosynthesis	00253	7.0e-26	68%
AutoFact	Histidine metabolism	00340	7.0e-26	68%
AutoFact	Tyrosine metabolism	00350	7.0e-26	68%
AutoFact	Phenylalanine metabolism	00360	7.0e-26	68%
AutoFact	Tryptophan metabolism	00380	7.0e-26	68%
AutoFact	Benzoxazinoid biosynthesis	00402	7.0e-26	68%
AutoFact	Selenocompound metabolism	00450	7.0e-26	68%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	7.0e-26	68%
AutoFact	Polycyclic aromatic hydrocarbon degradation	00624	7.0e-26	68%
AutoFact	Methane metabolism	00680	7.0e-26	68%
AutoFact	Porphyrin and chlorophyll metabolism	00860	7.0e-26	68%
AutoFact	Carotenoid biosynthesis	00906	7.0e-26	68%
AutoFact	Phenylpropanoid biosynthesis	00940	7.0e-26	68%
AutoFact	Flavonoid biosynthesis	00941	7.0e-26	68%
AutoFact	Anthocyanin biosynthesis	00942	7.0e-26	68%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	7.0e-26	68%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	7.0e-26	68%
AutoFact	Insect hormone biosynthesis	00981	7.0e-26	68%
AutoFact	Biosynthesis of type II polyketide products	01057	7.0e-26	68%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	7.0e-26	68%
AutoFact	Metabolic pathways	01100	7.0e-26	68%
AutoFact	Biosynthesis of secondary metabolites	01110	7.0e-26	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein methylation	GO:0006479	Biological Process	2.80728e-26	84%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	2.80728e-26	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.80728e-26	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 99 - 379

Fln protein: QNHQ*TALYLEMFV*MVYIKEKRAKSPNTLVLSTAPEEPPTHWAQTLLYIYDPLEVKQDQVIEGSITLSQSRENPRFLNIHLEYASGGRCFVKESIMR*

Protein Length: 100

Fln nts: CAGAATCATCAATAGACAGCTCTTTATCTGGAGATGTTCGTGTAAATGGTGTACATCAAAGAAAAGCGTGCGAAATCACCTAATACACTTGTACTATCAACTGCTCCAGAAGAACCCCCCACCCATTGGGCCCAGACTTTGCTCTATATCTACGATCCTTTAGAGGTGAAGCAAGATCAAGTAATTGAAGGTTCTATTACGTTGTCACAGAGTAGGGAGAACCCGCGCTTTCTAAATATACACTTAGAATATGCTTCTGGGGGACGATGCTTTGTGAAGGAATCTATTATGCGGTGA___TATTTTCAGGTTGTTATTGTTCACAGCCTTTGGGGCATCATTATGAAGCATTTTATTTGATTATTTAATTGGTTCCTTGACGTTTTCTGTAGCAAAGTTGATCTGAAGGAATGCTGGGCTCAATTCGTACCATAATTTTGTCCTATGAATATCATCATAGGAGCTGGGTGCTCTTGTATGATGTTTATGCTATTACCATGGCTATCAAGAGGAAAGTCTTAGAGCATGCCTAAGACTTCTCATTTTTGTAGTGGTTTATCTCAGAGTACACATTCTATTAGCAAAGGTGGAGAGTTTCCAGTGAAATAAGATGTCAAATATTGCTGAGGTTTCACAGAAAAGGACAATGCCAAATCTCAATTTGAAGAAGGTTGGTGAGCATATAACTTTTGATTCATTGTTCAATGGTTGCTTGCAAGCAGAAATACACCACATTGCAGAAAAATTTCAAATCCAGATGCCTTGTTTTATTCATTTGTGTTAGAAGTGTAAATTTGTATGAAGTGAGTGTTGGGAGGAATCAGAATTGTGGCCATATTGTTTTGCTACCTTCCATTTCACTTTTTCTCCCTCAGAATATAGCATGCTGATATGTCGTATGCTTTACTCTCAATGGAGTTCATCAAATCTGCCAAGAAATTTTCAGGCTGTCTCCATTATACAGGCACAGTAGCTATTTTCTGGATGTGTACAATTGACATTACAGGCACCTACTGCATGTAGGGTATTATAGTTATATGCCTTATCCTGCCTTTAAATCTGCAAATTTAACCCCCGTCATTTATGTATGGTGAACTTCTAAAAGAATATATTTCTTTCGTCAATGTTGTAGGTTTTCAAGaTTCTCTCTTGCATTGGTTGTCTTCTCTATGTGAGGTCTATAATTCAAAGCTACACTGTACTTTTAAGCTTTTAGCTAAGCCTTATTGTACTTTATTTACCAATCTCGGAAAGTGGGAAAGGACATTGAAGAACGTAAACGGCATAGTACAGACAATACATATTGTGAACACGTCTAAAATTTGTCCTTTATTTGACTTGTATCCCTTTTTGTGAATCGGTCTATCAAAAAcCTATTGTGGTGGAAAGTACTGTAAAAATAATGTATTCTTATTTCATGAAATGTAGGAGTAATTGTCGAG

Fln Alignment:

sp_v1.1_unigene11098___STAPEEPPTHWAQTLLYIYDPLEVKQDQVIEGSITLSQSRENPRFLNIHLEYA-SGGRC
A9NV48_______________STGPKSRATHWKQTVLYLEDVITICEGEALVGSMTIAQNSKNPRDVDITLEYSISGKRC

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
473		16		83	0.994512
478			16	83	0.994512
479	83	16			0.994512
484		16	83		0.994512
499	85		14		0.993533
501		14	85		0.993533
503		85		14	0.993533
504			14	85	0.993533
506		14		85	0.993533
508	85			14	0.993533
509	85			14	0.993533
511	85		14		0.993533
512		14	85		0.993533
514	85			14	0.993533
515	85	14			0.993533
517		14	85		0.993533
538		14		85	0.993533
543	87		12		0.992554
545		12		87	0.992554
546			12	87	0.992554
548			12	87	0.992554
549	12		87		0.992554
550		12		87	0.992554
551	87	12			0.992554
552			87	12	0.992554
556		12		87	0.992554
559	87	12			0.992554
560	12			87	0.992554
657		81	18		0.999994
709	33		66		1.0
740	71			28	1.0
742	60			40	1.0
743	60	40			1.0
745	60	40			1.0
844		75		25	0.996473
867			25	75	0.996473
942	75			25	0.996473
948			87	12	0.992554
953		87	12		0.992554
954	12			87	0.992554
960	87		12		0.992554
961			12	87	0.992554
964	87			12	0.992554
966			87	12	0.992554
1067	88	11			0.923564
1068			12	87	0.992554
1070			12	87	0.992554
1072	83	16			0.994512
1074		83		16	0.994512
1075		83		16	0.994512
1076		83	16		0.994512
1082		16		83	0.994512
1084		16		83	0.994512
1143	50	50			1.0
1317		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain