SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10947

Length: 1029 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10947 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome c biogenesis protein-like n=2 Tax=Oryza sativa RepID=Q6K7S7_ORYSJ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cytochrome c biogenesis protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	78%
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	protein complex	GO:0043234	Cellular Component	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome C biogenesis protein CcmH	IPR005616	-	0.0	78%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
137		75		25	0.996473
598		10		90	0.90298
599		10	90		0.90298
752			8	91	0.999807
753	8	91			0.999807
755	91			8	0.999807
756			8	91	0.999807
758		8	91		0.999807
760		91	8		0.999807
761		8		91	0.999807
762		8	91		0.999807
764	8	86		4	0.999539
765			8	91	0.999807
767		91		8	0.999807
772		8		91	0.999807
773			8	91	0.999807
859	37		62		1.0
884	66		33		1.0
889		22		77	0.999999
918		12	87		0.992554
920		12		87	0.992554
921		12		87	0.992554
922	12			87	0.992554
924		14		85	0.993533
946	83	16			0.994512
947		16		83	0.994512
948	16			83	0.994512
983		20	80		0.995493
984		20		80	0.995493
987	20	80			0.995493
988		60	20	20	0.99255
990	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain