SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10916

Length: 775 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10916 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	yth domain-containing protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	yth domain-containing	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA methylation	GO:0006306	Biological Process	77%
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	77%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	77%
Blast2go	DNA binding	GO:0003677	Molecular Function	77%
Blast2go	RNA binding	GO:0003723	Molecular Function	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	YTH domain	IPR007275	-	0.0	77%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
656	87	12			0.992554
657		12		87	0.992554
658		12		87	0.992554
761	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain