SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10785

Length: 1413 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10785

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	fca gamma	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	64%
Blast2go	RNA binding	GO:0003723	Molecular Function	64%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	64%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	64%
Blast2go	Paraneoplastic encephalomyelitis antigen	IPR002343	-	64%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK5

Fln msg: STOP codon was not found. Distance to subject end: 185 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 361 - 290

Fln protein: MEAPDLINNRYSMSRGPVKQQQQFGSEIQSNNSNNTNNINVKHFGAGGHSHAMPRPAYSPSPISGHKRDSSGFDVGRGSSPASVDGGNFVKLFVGHVPRTVTEDDIRQLFAEHGHVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGEREQLVEHKLFVGCLNKQASEDEIEEIFARFGHVDDIYIMRDEQKQSRGCAFVKYPSRDMAEAAISGLNGIHVMRGCSQPLAVRFAEPKRAKSGDMRNVPAFGGPGYGTELQRPFGSRPSFGGGGHMGGRGMPSNWRPAGVASVRNPSPQVGSHPYVAPSTPSGRSGSVGGHSPMVGPTSVSQMSMNGPI

Protein Length: 362

Fln nts: ATGGGGGGACTTCACATTTCTTCTTCGTGCTTTCGGTTTTGTCCATTTAAATACGTGTTCCTTGGCTGTCACTCATACGCGAGATAAGAATCCAAAACCCTTCTCATTCGAGGGTTTGGCAGCTCTGGAGCCACAGCCTCCATTGTCATCAACTCTGCCTTCTTCAGCTCATTATCATCTATCAACCCATCTTAGGTTATCGAATTTGGTGATCTATCCGTCTGGGCATTGAGTGACAAGGGTTTCGAAAAAGTAGAGTTAATTTTTTTCAGTACAGCAGGTACGTCAACCAGAGTGCAGTCTGCTTTAACTGTGGCAAAGAGGGGTTCA_-_ATGGAGGCCCCGGACCTCATCAATAACAGATATTCCATGAGCCGGGGTCCTGTAAAGCAACAACAACAGTTCGGCTCTGAAATACAGAGCAATAATAGTAATAACACTAACAACATCAATGTTAAGCACTTTGGAGCTGGAGGTCACAGTCACGCTATGCCACGGCCTGCGTACAGTCCATCTCCTATTTCAGGCCACAAAAGGGATAGCAGTGGTTTCGATGTTGGGCGCGGCAGTTCTCCAGCTTCTGTTGATGGTGGGAACTTCGTCAAACTTTTTGTGGGGCATGTACCCAGGACTGTTACAGAAGATGATATACGACAATTATTTGCAGAACACGGCCATGTACTTGAAGTTAATATGGTGAGAGAGAAAAGAATTGGCCAACAACATGGCTGCTATTTTATCAAATATGCAACTATTGAGGAAGCTGAGAGAGCCATTAAAGCTCTTCACAATAAACATACATTACCAGGGGGGATCAGTCCTTTACAAGTTAGATTTGCTGATGGAGAGCGGGAGCAGCTGGTGGAGCACAAATTATTTGTTGGTTGCTTAAATAAACAAGCATCAGAAGATGAAATTGAAGAGATTTTTGCTAGGTTTGGTCATGTTGATGACATATATATCATGAGAGATGAACAGAAGCAGAGCAGAGGGTGTGCATTTGTGAAGTACCCATCGAGAGATATGGCAGAAGCAGCCATTAGTGGATTGAATGGAATTCATGTGATGAGAGGTTGCAGTCAACCTTTGGCTGTGCGATTTGCTGAGCCCAAGAGAGCTAAATCTGGAGACATGAGAAATGTGCCTGCATTTGGAGGTCCAGGTTATGGAACAGAATTGCAGAGGCCATTTGGATCAAGGCCATCTTTTGGTGGTGGAGGGCACATGGGAGGACGTGGCATGCCTTCAAACTGGCGTCCTGCTGGTGTCGCAAGTGTGAGAAACCCATCTCCACAAGTTGGTTCCCATCCTTATGTTGCCCCTTCAACTCCTAGTGGTAGATCAGGATCTGTTGGAGGACACTCACCAATGGTGGGCCCAACGAGTGTTTCACAAATGTCAATGAATGGTCCGATT

Fln Alignment:

sp_v1.1_unigene10785___GGNFVKLFVGHVPRTVTEDDIRQLFAEHGHVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGER
A9NWK5_______________GSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT-DMDG--RPLRVNIAEDRR

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
23	33	66			0.997452
24			33	66	0.997452
25		33	33	33	0.997753
26		66	33		0.997452
28			33	66	0.997452
32		33		66	0.997452
35		66	33		0.997452
37		33	66		0.997452
41		33		66	0.997452
42	33			66	0.997452
43		33	66		0.997452
46	33	66			0.997452
56	50	50			1.0
57	50		50		1.0
60	50		50		1.0
63	50			50	1.0
67		50		50	1.0
69		50	50		1.0
73		50	50		1.0
75	50	50			1.0
693			87	12	0.992554
694			12	87	0.992554
695			12	87	0.992554
696	87		12		0.992554
697	87	12			0.992554
995	83		16		0.994512
1000	16		83		0.994512
1092		20		80	0.995493
1324	14	85			0.993533
1325		85		14	0.993533
1326		85	14		0.993533
1327		85	14		0.993533
1328			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain