SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10604

Length: 1502 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10604 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	STOP1; STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding	-	-	1.0e-10	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	c2-h2 zinc finger protein	-	-	2.21718e-13	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	2.21718e-13	73%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	2.21718e-13	73%
Blast2go	binding	GO:0005488	Molecular Function	2.21718e-13	73%
Blast2go	nucleus	GO:0005634	Cellular Component	2.21718e-13	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	2.21718e-13	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 113 - 537

Fln protein: CGRDKWQCSCGTTFSRKDKLFGHIALFQGHRPVSSPNDMEGAAPQDQAVNDGGAPKIGNSVSGFEIPVVMFQGFWRVQKLLDPFTVTVTPLQLAQEQMAQYWNQVMMPFIVR*

Protein Length: 114

Fln nts: CTGTGGTCGAGATAAATGGCAGTGTTCCTGTGGCACGACATTCTCCAGAAAGGACAAGCTCTTTGGACATATTGCCCTATTTCAAGGCCATAGGCCTGTCTCTTCTCCCAATGACATGGAAGGGGCCGCTCCGCAAGATCAAGCAGTAAATGATGGAGGAGCACCCAAAATTGGTAATTCAGTATCAGGCTTTGAAATTCCCGTGGTAATGTTTCAGGGATTCTGGCGGGTACAAAAGTTGTTGGATCCATTCACAGTAACAGTAACGCCCCTTCAATTGGCCCAGGAGCAAATGGCACAGTATTGGAATCAAGTAATGATGCCGTTCATAGTCAGATAG___GTCTTAAAAATATTGGCTTCTCAGAGGATGGCAATTCACATAGTATGGGAGTGGATTCTTCAAACCAAATGTCTGGGTTTCCTCAAGCATTTACGTTCCAAAGCCTGCTTTCCAACAATTTCCTTCAGCAAGGTAGAGGAAATTAGGAATCCAATCTGCTGCAAATTTCAATTAATACTGTAGCAATTTTTGGAGTAGAGTGGGTCATGACTACCATAACTCTTCTGAAGTTGTGCAGTTGTTGGTAAAGATGAAGCATAGATCGGAGGGATTGGGTTCAATGCTTAGAACGTCCAAGAAAGTTAATTAATAAGACAGAGCAAAAAGACAATCTGGTTTTCTTTAGTGCATGGAAAGGGGAAATTCAAAAAGAAGACAGAATTCTGTAACAAATGAAGCTTTCAACTGGCTTTTCTTTTCTCTCCTATTTTTTCACATTTTGGCATGCAGGTAAGAGACACTAGTCTGAAATCAATGTGCCCAAACATTTCTCAGCTTTGTTGGGTAAATATGAAGCGTAGATCAGAGGGATTGGGTTCTATGCTCACTATGTCCAAGAAAGTTAATTGTAGGAGAGAGCAAAGAGACTTGCATCTTGTTTTCTTGAGTGCTAAAAGGGAAGTGGAAAAACAAAAGACAGAATTCTATAACTATAAAATGAAGCTTCGGCCAACTTTGTTTTCCTTTGTGTTTTTCACATTTTGGTCTGCAGGTAAGAGATACTAAGTTGAAAATCAAGACGAAAATATTTTGTGCCAGAATATTTCTCAGCTTTGTTGAGCATTCTGGGAATAGCCAGTGGATACAGCCTTATATAGGAACATGACAGATAGTGGTCAAAGTGTTTCTGATTCAATGATATCTTGTGTAAATTATTATAGAGATAACTGGCTGCAATGTTGGTGCTCAGGAGTCAGAACCCTGCACAGAGCTATGTTATTTTTGTCAACTGGCTGTTGTTTGTAGAATGACATCTGCAAAAAAGCTTCATTGATAAGATGGTCTTATGTAATGAGTAGAGATTGGTTGATCTGGCCAGGCCTGTATGTTAACTTTAATGTTAAATTTAACTGTGCAGACTACAGATAGGCAAATGATAAAATCCCTATCTTATTAAGTACAATAGTTTGATTAGTGCCTAATTTTTAATACGTCTGTGTTC

Fln Alignment:

sp_v1.1_unigene10604___CGRDKWQCSCGTTFSRKDKLFGHIALFQGHRPVSSPNDM
D5A9S2_______________CGHNPWRCSCGTTFTRKDKLFGHVALFQGHKPLLPDHEL

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
564	85		14		0.993533
566	85		14		0.993533
567		85		14	0.993533
568	85		14		0.993533
570		14	85		0.993533
572			14	85	0.993533
573		14	85		0.993533
580	14			85	0.993533
582			14	85	0.993533
583	14			85	0.993533
584		14		85	0.993533
682		40		60	1.0
722		75		25	0.996473
977	83			16	0.994512
989			80	20	0.995493
990			20	80	0.995493
992			20	80	0.995493
994	80		20		0.995493
996		20		80	0.995493
997	20			80	0.995493
1000	80	20			0.995493
1003			20	80	0.995493
1004			20	80	0.995493
1011	20	80			0.995493
1012	80	20			0.995493
1031		75		25	0.996473
1032		75	25		0.996473
1033	25			75	0.996473
1034		75	25		0.996473
1036	75		25		0.996473
1037	25	75			0.996473
1040	25			75	0.996473
1044		25	75		0.996473
1049	75			25	0.996473
1050	75	25			0.996473
1053		25		75	0.996473
1055	25			75	0.996473
1056		25		75	0.996473
1308	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain