SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10508

Length: 1607 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10508

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GNL6_POPTR	-	-	78%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	61%
Blast2go	ap2 domain-containing transcription factor	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	89%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	89%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Overlapping hits, possible frame ERROR between 278 and 116, query STOP codon too far from subject stop. Distance to subject end: 267 aas, putative chimeric sequence, your sequence is shorter than subject: 184 - 606

Fln protein: GVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKHMTRQEYVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTNAVTNFDISPRFLS*

Protein Length: 185

Fln nts: ATGGGGTGCCTCGAAAATCCATTGATACTTTTGGTCAACGGACATCTCAATACCGTGGTGTCACAAGGCATCGGTGGACAGGGCGCTACGAGGCTCACTTGTGGGATAACAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGCACATGACCAGGCAGGAGTACGTTGCCAATTTGAGGAGGAAGAGTAGTGGATTTTCCAGGGGCGCATCTATGTACCGAGGAGTAACAAGGCACCACCAGCACGGGAGATGGCAGGCGCGCATTGGCCGAGTTGCAGGGAACAAGGATCTCTACCTGGGAACTTTCAGTACCCAGGAAGAAGCGGCGGAAGCCTACGACATCGCCGCCATCAAGTTCAGGGGCACAAATGCTGTCACAAATTTTGATATCAGCCCGAGGTTCCTATCGTAATTCATCAAATTGCCAACGAAAAATACAGCGCCAAGGAAACCGATTATGAAGACGAGGACACCAAGAACAACAACAACTGGCAAATGCAGGTGCAGGTGAGCGATGGCGATCAGAACGGTCACATTAATTCTTGTTCCAATGAGCCTTCCGACCATGGCAAAATCTGGGATGATGACCAGAAGCCCAACCAGTGCTTCACTGAATCTCAACACCTGGCAGCTCTTCATAACCTAATGGGACTCGATCATGCGACCACCACAGAAAGAAACGGGGAATCATCAAACAACAATAATAATAACAACCCATTATTGACAGATATCTCGGCATCTCCCACAAGCCCAGGGGCTTCAATGGGGCGCGAGGAACATGAAGAAGAGGCCGCGGCGGCCATGAGCCCCAATACCCAGAACGAGAATGGCCTCTTCTTTTCCTCGAAACAGCCGGCCTTACAGATCAACAATGCGCTGAGCTCTTGGATGACACAGGCCGCGAGACCTGCAATTAATTCCATGGCTCATCACATCCCAATGTTCGCATCCTGGACCGATACGTAGTAACATACCCCTCCAAGAAATCAATAATGGTAGCCATCTGAACAAAAAAAAAAAAACCTTGTCACCATTATAGATTATGAACGGTAAATTGCAAAAATCCATTTTGAGGCGCCGGATTTTGATCACCCTCGATTTTACAGGCTCTACTGCCCGCTTGCCTGCGCCGGAATTGTTGCAATTCACGTAACAAATTTACATAGAAATGATCATATGTACACAGGAGTCTCAAGTATTTGCCAGCAACATTGTCCTGCTTTTGCTAACAACGAACATGTATTTTGACATTGTATCTACAGATTTTGTGAAGCTGGAATCATTTTTCATTTTAGCACTTTGGATTCAACCTCTCCATCTTTTTGCTGTAACTGAAAATGGACAGAAAAACACGTCCTTCCTACTGTGAGAAAAAACAAATCTGGCCGTATAATTTTTATTCCCAGTACTTGCAGCTAGATTTTTCACTCAGATCCTTGGCTCATTCTTTAAGAGCCTGTTCAGCT

Fln Alignment:

sp_v1.1_unigene10508___VPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQEYVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTNAVTNFDIS
Q76H96_______________VPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDIS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
730	80		20		0.995493
800		80		20	0.995493
814	14	85			0.993533
815		85		14	0.993533
816	85		14		0.993533
817		83	16		0.994512
818	83		16		0.994512
867		20		80	0.995493
932	85		14		0.993533
1052	80		20		0.999996
1058	90		10		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
619	630	AAC AAC AAC AAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain