SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10448

Length: 1323 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10448

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	wd-repeat protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRP5

Fln msg: your sequence is shorter than subject: 272 - 464

Fln protein: VWDSPLEYKVLIYSPDGRCLFKYQAYDSWLGVKTVAWSPCSQFLAVGSYDQTLRTLNQLTWKPFAEFVHVSTVRGPASAVVFKEVEEPWNLDVSGLHLNDDNAHDIQDGKPENAAEGHSRVRYKVVEFPVNVSSQKHPVDKPNPKQGIGLLAWSRDSQYLFTRNDNMPTALWIWDIRRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACCVNIPLPQFVVSDLKWNPDGTSMLLKDRESFCCTFVPMLPEFNDDETNEE*

Protein Length: 273

Fln nts: TTGTTTGGGACTCCCCACTTGAGTACAAGGTTCTTATTTACTCTCCAGATGGGCGGTGTTTATTTAAATATCAAGCTTATGACAGTTGGCTAGGTGTGAAGACTGTTGCATGGTCTCCATGTAGCCAGTTTCTGGCAGTAGGCAGTTATGATCAAACACTGAGGACTTTGAATCAGCTTACTTGGAAACCTTTTGCAGAATTTGTGCATGTGAGCACTGTTCGAGGTCCTGCCAGTGCTGTTGTTTTTAAGGAAGTAGAGGAACCATGGAATCTTGACGTGTCTGGTCTTCACTTGAATGATGACAATGCTCATGACATCCAAGATGGCAAGCCAGAGAATGCAGCTGAAGGCCATTCTAGGGTCCGGTACAAGGTAGTGGAATTTCCTGTCAATGTATCTTCACAAAAGCATCCCGTGGATAAACCAAATCCAAAGCAAGGCATTGGCTTGCTAGCGTGGAGTCGAGATAGCCAATATTTGTTCACTCGCAATGACAATATGCCAACGGCACTTTGGATATGGGATATTCGTCGCCTTGAGCTTGCTGCACTTCTGATACAGAAAGAGCCCATTCGTGCAGCTGCCTGGGATCCAGTATATCCTCGTGTGGCTCTTTGTACAGGAAGCTCACATTTGTACATGTGGACACCCTCTGGTGCTTGTTGTGTAAATATTCCTCTGCCACAATTTGTCGTATCAGATTTAAAATGGAACCCAGATGGAACTTCTATGCTTCTGAAGGATCGTGAGTCGTTTTGTTGTACTTTTGTTCCTATGCTTCCTGAATTCAACGACGATGAAACTAATGAGGAATAG___TACACACAAAGCAAAAAATGTATCCAACATCACTTGTGACAAGGCCATCGTTGTCTGCGAATCTTCTTGGTCAACTGCAAATGACCTCTGTATACTTCTCCTGGTCGTTTACACTCTAGTGCTCACAACAGTGATTGTTTACTAGTTTCAGCTATGCCTTGAGTGTCTCCTACATTCTGCAACAAGTTATTTAGCCGTACCACTGTTGAAATTGTGCAAAGTTGATCCTTGGAAAGTTTATTCCAATGTTTAAGATACAACTTGCTGCAATGCCTTAGGAGTTCCAATTCTTCCCGTTCAGCTATATGAATAGCAGCTGAGTGGTTATAGAGCTTCTCTCCATTCTTATTACTTCACTCGAGGACGTGATGTCTACTTCAATTTTTATAATTATATGTTGGATTTATCTATCGACCTTTTATTCATTCTCTTAGTCTTGTAGGCATCAATTCTTATCATAAATATATTGTACTGGGGATCCAAGACATGGCAATATATGTCGATA

Fln Alignment:

sp_v1.1_unigene10448___VWDSPLEYKVLIYSPDGRCLFKYQAYDSWLGVKTVAWSPCSQFLAVGSYDQTLRTLNQLTWKPFAEFVHVSTVRGPASAVVFKEVEEPWNLDVSGLHLNDDNAHDIQDGKPENAAEGHSRVRYKVVEFPVNVSSQKHPVDKPNPKQGIGLLAWSRDSQYLFTRNDNMPTALWIWDIRRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACCVNIPLPQFVVSDLKWNPDGTSMLLKDRESFCCTFVPMLPEFNDDETNEE
B8LRP5_______________VWDSPLEYKVLIYSPDGRCLFKYQAYESGLGVKTVAWSPCSQFLAVGSYDQTLRTLNHLTWKPFAEFVHVNTVRGPASAVVFKEVEEPWHLDMSGLHLNDDNPHDIQDGKPENAAEGHSRVRYKVVEFPVNLSSQKHPLDKPNPKQGIGLLAWSRDSHYLLTRNDNMPTALWIWDICRLELAALLIQKEPIRAAAWDPVYPRVALCTGSSHLYMWTPSGACCVNIPLPQFVVSDLKWNPDGTSMLLKDRESFCCTFVPMLPEFNDDETDEE

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
431	88	11			0.923564
432	88		11		0.923564
435		88	11		0.923564
436	88			11	0.923564
437	88		11		0.923564
439		12	87		0.992554
441	87			12	0.992554
442	87			12	0.992554
446	87			12	0.992554
447			12	87	0.992554
449		12	87		0.992554
450	12		87		0.992554
453	12			87	0.992554
788		10	90		0.90298
789	88		11		0.923564
814		44	55		1.0
945	89		10		0.999919
946		89		10	0.999919
947	89		10		0.999919
950	89	10			0.999919
951			89	10	0.999919
954	89		10		0.999919
955		10		89	0.999919
960		10		89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain