SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10411

Length: 3796 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10411
ATGGGGGTAGAATAGTCATTTCCTTGGGGAATTATGTTGTGCGATCGGGTGTATTATTTGCACAGGTGATTCTTGAAGGAGCAAATTTCAGTCCGCTTTTCTGAATTCGACCTTTTTTTTCTCCTGCTTGGAAGAGTTGGAAATCCTCCAGATTTGGCGGTTTGCGAGGCAGACGAGCCCAATCCCGGATTGCAGGGTTTGCAATCGTCGTTCGGCGGCATCAGTTTTGGATCTATGTAATCTAAACAGAAACGCACTACAAAAAACCAGGAAAGTAAGTGTCTTGAAGGATGATTGGTGCCTCAGCATCATTGAAGGTTTGGATGGCTGGTTGATGTATTTCGGTAATGCTAAGAAAGACAGGATTACGGTGGGGGTGGTTTAGGGCTGGCATTGGAGAATTATCTTGATTCCAGCCACAGAACGGCGGCGCCATTGGCGTCACCGGCTCTGGTGGCTGGAGGCCAAGCTCAAACAGCCTCTTCTAGTTCAGGTATCATTTACCACGTCAACAGTCACAAACATAATTCTAGCGGATCGCAACTGAAAGGAGCTTTTGGGAGTTTGTCTCAACAATTTGTAGTTGGAAGGGGAATTCGGGATTTACTGCGGGTGACATGAATCAGGTTTTGAACAGTGCAGCAAACTCTGGGCCTAGTGTTGGGGCGAGTTCTTTAGTTACTGACGCTAATTCAGCCCTTTCTGGAGGGGCCCAACTTCAGCGGAGCGCAAGTAACAATACGGATTCGTTTATGCGCCTTCCGAACTCACCAATGTCATTTTCATCCGGGAATATTAGTGTGTCGGGCTCTTCTGTTATGGATGGATCATCCTTAGCCCAACAGAGTGGGTCTTCTCTAACTAGGCTCGAGTCCAACCAAGATCAAGCAGTGCAACAGCAGCAGTTTCAACAGAGGCAGCAACAAGGAGCATCTACGCCAACCTCGCAACAAAAAATGCAGCAAACTTCACAACAGCAGGTTGTCTCACAACAAGGTCAATCCCAGGGAACTGGGCCACAGCTTGGTGTCCAACAGATGGTTGGGCAACAAACTGCTGGGAGTGGTCCGCAGCTAGGGCAACGACTGCCCCATATCTCTCCCAAGCTTGAAACTGGTACGGGTCTTATCTCTCCGAAACTTGAAACTGGTTCGGGTATTATCTCCCCCAAAATAGAAACCTGTGCAGGTCTTATAACTCCAAAACTTGAAAAGAGTGATCAATTTCTGCAACAGTCTCAAATGATGAAGTCTAGGATGGATTTAAAAGCAGAAGATGCTTTACAACAACAAGTTGTTCAGCAAATTATGCAGAGGCCTGAAAGTGTATTGGCTGCCCAGCTTCAAAGACAAGAGTCCATGCAAAGACATTCTTCTCCACAACTGCATGCACTTATTCAGCAGCAGAGAATGATGCAGCACCATCAGCAGCAGCAGTTGCTACAGTCACTGCCTCAGCACTTGCAGCGGTCTCATCTTCAGCAACAACAACAGCAGTTGCGACATCATATTCAACAGCACAACATTCCACCCACATCTTTGACAAAGCAGCCTGCAATGGAGAGTGGATTGTGTGCCCGTAGGCTGATGCAATACCTATACCATCAACGACATCGGCCTCCTGATAACAATATTGGTTATTGGAGAAAATTTGTGGCCGAGTTCTTTGCTCCTAATGCAAAGAAGAGGTGGTGTCTATCTTTGTATGGAAATGTTGGGCATCACACACTCGGGGTTTTTCCTCAAGCTGCAATGGATGTGTGGCAATGTGAGATCTGTGGATCAAAGCCAGGGCGGGGATTTGAAACAACTGTGGAGGTACTTCCAAGATTGTGCAAGATCAAATTTGACAGTGGAGTGATAGATGAACTTCTCTTTGTGGATATGCCGCAAGAATGTAGACTCGGTTCAGGGTTAATGGTATTGGAATATGGAAAAGCCACACAAGAAAGTGTCTTTGAGCAGCTTCGTGTTGTACGGAATGGTCGGTTACGGATAATATTCACTTCCGAGTTGAAGATTTTGTCTTGGGAGTTCTGTGCAAGAAACCACGAGGAGCTTTTACCTCGCAGGTTGGTAGCACCTCAGGTAAATCAGTTAGCAATGGTGGCACAAAAATATCAAAATGCTGCTGCACAAAGTGGTAGTTCTGGCCTCTCTGTACAAGATCTGCAAGCGAATTGCAATATGTTTGTGACAACTGGGCGTCAGCTGGCACGAAATTTAGAAGCACAGTCACTGAATGACCTTGGTTTTTCCAAGAGATACGTCCGGTGCTTACAGATATCTGAGGTTGTGAACAGCATGAAGGATTTGATTGATTTTAGTCGGGAACATAATATGGGGCCAATTGCAAGTTTAAACAATTTCCCTCGTCAGACTGCTTCTTCTAACCTGCAAAGTCAGCAGATGCAGCAAGGAGATCCTGTTGGAAATATTCAAGGATTAGCTTCAGACCATAACAGCGTAAAAATGAATCAGATGCATGGTAATATGAACAATCATATAAATAGCCATGTTAGTGGAATTGTTAATAATTCTTCTCACAATGCTACAGCCCTGAACAACTATCAAAATCTCCTGCGCCAAAATTCAATGACTACTTCACAGAATGCTTTACAGCAAGAAGCATCTTGTTCATTTGGTGGCTCAACGCAAACACCACCATGCAATTCTTTACAAAGCCCTTCTCATTCTATTCCATTTCAGGGTGCCGCTCTATCTTCAATGCCAGGAACCCTGCAAAATACCTCTCTTATCGGTTTGTCCAATTCTATTCAGCAGAACTCTGTGGGTGGAAACTTGCTGCAGCAAACACATCCACAGTCATCCCAGGGCAATCAACCTTATCCACAGCAAGTAATACAACAGTTGTTGCAAGAAATGATGAATACTGGAGGAACATCACAGCAGGCATTGGTTGGGCAAGGCTTAAACGGAAATGTTGGGAACATGCTTAATGGTTTGACTGGATCTGGGGGCCTGGGCATTGGTTCTGGTGCAGTGCGAAGTGGTGCTGGCATGATGGGCAATGGTTTGGGTTATGGAAATAACAATATATCTAACATAACTGGAAACACAGGGACAGCTCTGGGTGGAGCAGGGAATTTAATATCTGGTAGAAGCAACAGTTTTAGGAATATAGGCAATAATTCTGCGCCTGTTGGCAGCATTGGATCTAATAGTTTTGGTGGAAGATTAAATATAGGTGCTATAGCTCAGCCGCAAAATCTTCACATGCAAGATGTGGTTCAAGACCTCCCACATGAATTCCCAGATAATGGCATTTTTAATGGGCTGGCAGCAAACGGTGATTCTGGTGATAATCCATTTGGCTGGAAAACCTCTTGATACTGATGACATGTCATTTGGAACAGATTCACAATTTGGTTCTTGTATGACATATGCACGTTGGAATGTAATGATTGCAATCCTAAGTTTTGTGCTTGGCACTTAATTGATTGATGTTTGATGTCAGAACTTTCTCATGAACAGATGTAATTGATTGGATCTGGCAGTTTTGTTCTGAAAAAGGATATATTGTAACTTTATATACCCCCCTGTTAAGGGAACTATGTTGCATCTTCAAAGAGAGGTTTGTCTTCATTGTAATCATCTCCAAGTCAATTTGTATACTATAATACTTGAGCTTTTTATTTAGCTTCCTATTCGTTTATTGTAGTCTTTCGTAGCTGTAAAGAACAGTCTCTTGTTTCAATTTCTCAATTTTTCTTGTAGCCTTAAGCCTTAGAGCATTGGCAGTCAATCCACATTATTTTGTACGAGGCATTGCAATT

Ace file of the UniGene sp_v1.1_unigene10411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcriptional corepressor SEUSS, putative n=1 Tax=Ricinus communis RepID=B9R9G2_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	transcriptional corepressor	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	0.0	66%
Blast2go	ovule development	GO:0048481	Biological Process	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LIM-domain binding protein	IPR002691	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUL7

Fln msg: your sequence is longer than subject: 911 - 291

Fln protein: MNQVLNSAANSGPSVGASSLVTDANSALSGGAQLQRSASNNTDSFMRLPNSPMSFSSGNISVSGSSVMDGSSLAQQSGSSLTRLESNQDQAVQQQQFQQRQQQGASTPTSQQKMQQTSQQQVVSQQGQSQGTGPQLGVQQMVGQQTAGSGPQLGQRLPHISPKLETGTGLISPKLETGSGIISPKIETCAGLITPKLEKSDQFLQQSQMMKSRMDLKAEDALQQQVVQQIMQRPESVLAAQLQRQESMQRHSSPQLHALIQQQRMMQHHQQQQLLQSLPQHLQRSHLQQQQQQLRHHIQQHNIPPTSLTKQPAMESGLCARRLMQYLYHQRHRPPDNNIGYWRKFVAEFFAPNAKKRWCLSLYGNVGHHTLGVFPQAAMDVWQCEICGSKPGRGFETTVEVLPRLCKIKFDSGVIDELLFVDMPQECRLGSGLMVLEYGKATQESVFEQLRVVRNGRLRIIFTSELKILSWEFCARNHEELLPRRLVAPQVNQLAMVAQKYQNAAAQSGSSGLSVQDLQANCNMFVTTGRQLARNLEAQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFSREHNMGPIASLNNFPRQTASSNLQSQQMQQGDPVGNIQGLASDHNSVKMNQMHGNMNNHINSHVSGIVNNSSHNATALNNYQNLLRQNSMTTSQNALQQEASCSFGGSTQTPPCNSLQSPSHSIPFQGAALSSMPGTLQNTSLIGLSNSIQQNSVGGNLLQQTHPQSSQGNQPYPQQVIQQLLQEMMNTGGTSQQALVGQGLNGNVGNMLNGLTGSGGLGIGSGAVRSGAGMMGNGLGYGNNNISNITGNTGTALGGAGNLISGRSNSFRNIGNNSAPVGSIGSNSFGGRLNIGAIAQPQNLHMQDVVQDLPHEFPDNGIFNGLAANGDSGDNPFGWKTS*

Protein Length: 912

Fln nts: ATGGGGGTAGAATAGTCATTTCCTTGGGGAATTATGTTGTGCGATCGGGTGTATTATTTGCACAGGTGATTCTTGAAGGAGCAAATTTCAGTCCGCTTTTCTGAATTCGACCTTTTTTTTCTCCTGCTTGGAAGAGTTGGAAATCCTCCAGATTTGGCGGTTTGCGAGGCAGACGAGCCCAATCCCGGATTGCAGGGTTTGCAATCGTCGTTCGGCGGCATCAGTTTTGGATCTATGTAATCTAAACAGAAACGCACTACAAAAAACCAGGAAAGTAAGTGTCTTGAAGGATGATTGGTGCCTCAGCATCATTGAAGGTTTGGATGGCTGGTTGATGTATTTCGGTAATGCTAAGAAAGACAGGATTACGGTGGGGGTGGTTTAGGGCTGGCATTGGAGAATTATCTTGATTCCAGCCACAGAACGGCGGCGCCATTGGCGTCACCGGCTCTGGTGGCTGGAGGCCAAGCTCAAACAGCCTCTTCTAGTTCAGGTATCATTTACCACGTCAACAGTCACAAACATAATTCTAGCGGATCGCAACTGAAAGGAGCTTTTGGGAGTTTGTCTCAACAATTTGTAGTTGGAAGGGGAATTCGGGATTTACTGCGGGTGAC_-_ATGAATCAGGTTTTGAACAGTGCAGCAAACTCTGGGCCTAGTGTTGGGGCGAGTTCTTTAGTTACTGACGCTAATTCAGCCCTTTCTGGAGGGGCCCAACTTCAGCGGAGCGCAAGTAACAATACGGATTCGTTTATGCGCCTTCCGAACTCACCAATGTCATTTTCATCCGGGAATATTAGTGTGTCGGGCTCTTCTGTTATGGATGGATCATCCTTAGCCCAACAGAGTGGGTCTTCTCTAACTAGGCTCGAGTCCAACCAAGATCAAGCAGTGCAACAGCAGCAGTTTCAACAGAGGCAGCAACAAGGAGCATCTACGCCAACCTCGCAACAAAAAATGCAGCAAACTTCACAACAGCAGGTTGTCTCACAACAAGGTCAATCCCAGGGAACTGGGCCACAGCTTGGTGTCCAACAGATGGTTGGGCAACAAACTGCTGGGAGTGGTCCGCAGCTAGGGCAACGACTGCCCCATATCTCTCCCAAGCTTGAAACTGGTACGGGTCTTATCTCTCCGAAACTTGAAACTGGTTCGGGTATTATCTCCCCCAAAATAGAAACCTGTGCAGGTCTTATAACTCCAAAACTTGAAAAGAGTGATCAATTTCTGCAACAGTCTCAAATGATGAAGTCTAGGATGGATTTAAAAGCAGAAGATGCTTTACAACAACAAGTTGTTCAGCAAATTATGCAGAGGCCTGAAAGTGTATTGGCTGCCCAGCTTCAAAGACAAGAGTCCATGCAAAGACATTCTTCTCCACAACTGCATGCACTTATTCAGCAGCAGAGAATGATGCAGCACCATCAGCAGCAGCAGTTGCTACAGTCACTGCCTCAGCACTTGCAGCGGTCTCATCTTCAGCAACAACAACAGCAGTTGCGACATCATATTCAACAGCACAACATTCCACCCACATCTTTGACAAAGCAGCCTGCAATGGAGAGTGGATTGTGTGCCCGTAGGCTGATGCAATACCTATACCATCAACGACATCGGCCTCCTGATAACAATATTGGTTATTGGAGAAAATTTGTGGCCGAGTTCTTTGCTCCTAATGCAAAGAAGAGGTGGTGTCTATCTTTGTATGGAAATGTTGGGCATCACACACTCGGGGTTTTTCCTCAAGCTGCAATGGATGTGTGGCAATGTGAGATCTGTGGATCAAAGCCAGGGCGGGGATTTGAAACAACTGTGGAGGTACTTCCAAGATTGTGCAAGATCAAATTTGACAGTGGAGTGATAGATGAACTTCTCTTTGTGGATATGCCGCAAGAATGTAGACTCGGTTCAGGGTTAATGGTATTGGAATATGGAAAAGCCACACAAGAAAGTGTCTTTGAGCAGCTTCGTGTTGTACGGAATGGTCGGTTACGGATAATATTCACTTCCGAGTTGAAGATTTTGTCTTGGGAGTTCTGTGCAAGAAACCACGAGGAGCTTTTACCTCGCAGGTTGGTAGCACCTCAGGTAAATCAGTTAGCAATGGTGGCACAAAAATATCAAAATGCTGCTGCACAAAGTGGTAGTTCTGGCCTCTCTGTACAAGATCTGCAAGCGAATTGCAATATGTTTGTGACAACTGGGCGTCAGCTGGCACGAAATTTAGAAGCACAGTCACTGAATGACCTTGGTTTTTCCAAGAGATACGTCCGGTGCTTACAGATATCTGAGGTTGTGAACAGCATGAAGGATTTGATTGATTTTAGTCGGGAACATAATATGGGGCCAATTGCAAGTTTAAACAATTTCCCTCGTCAGACTGCTTCTTCTAACCTGCAAAGTCAGCAGATGCAGCAAGGAGATCCTGTTGGAAATATTCAAGGATTAGCTTCAGACCATAACAGCGTAAAAATGAATCAGATGCATGGTAATATGAACAATCATATAAATAGCCATGTTAGTGGAATTGTTAATAATTCTTCTCACAATGCTACAGCCCTGAACAACTATCAAAATCTCCTGCGCCAAAATTCAATGACTACTTCACAGAATGCTTTACAGCAAGAAGCATCTTGTTCATTTGGTGGCTCAACGCAAACACCACCATGCAATTCTTTACAAAGCCCTTCTCATTCTATTCCATTTCAGGGTGCCGCTCTATCTTCAATGCCAGGAACCCTGCAAAATACCTCTCTTATCGGTTTGTCCAATTCTATTCAGCAGAACTCTGTGGGTGGAAACTTGCTGCAGCAAACACATCCACAGTCATCCCAGGGCAATCAACCTTATCCACAGCAAGTAATACAACAGTTGTTGCAAGAAATGATGAATACTGGAGGAACATCACAGCAGGCATTGGTTGGGCAAGGCTTAAACGGAAATGTTGGGAACATGCTTAATGGTTTGACTGGATCTGGGGGCCTGGGCATTGGTTCTGGTGCAGTGCGAAGTGGTGCTGGCATGATGGGCAATGGTTTGGGTTATGGAAATAACAATATATCTAACATAACTGGAAACACAGGGACAGCTCTGGGTGGAGCAGGGAATTTAATATCTGGTAGAAGCAACAGTTTTAGGAATATAGGCAATAATTCTGCGCCTGTTGGCAGCATTGGATCTAATAGTTTTGGTGGAAGATTAAATATAGGTGCTATAGCTCAGCCGCAAAATCTTCACATGCAAGATGTGGTTCAAGACCTCCCACATGAATTCCCAGATAATGGCATTTTTAATGGGCTGGCAGCAAACGGTGATTCTGGTGATAATCCATTTGGCTGGAAAACCTCTTGA___TACTGATGACATGTCATTTGGAACAGATTCACAATTTGGTTCTTGTATGACATATGCACGTTGGAATGTAATGATTGCAATCCTAAGTTTTGTGCTTGGCACTTAATTGATTGATGTTTGATGTCAGAACTTTCTCATGAACAGATGTAATTGATTGGATCTGGCAGTTTTGTTCTGAAAAAGGATATATTGTAACTTTATATACCCCCCTGTTAAGGGAACTATGTTGCATCTTCAAAGAGAGGTTTGTCTTCATTGTAATCATCTCCAAGTCAATTTGTATACTATAATACTTGAGCTTTTTATTTAGCTTCCTATTCGTTTATTGTAGTCTTTCGTAGCTGTAAAGAACAGTCTCTTGTTTCAATTTCTCAATTTTTCTTGTAGCCTTAAGCCTTAGAGCATTGGCAGTCAATCCACATTATTTTGTACGAGGCATTGCAATT

Fln Alignment:

sp_v1.1_unigene10411___MNQMHGNMNNHINSHVSGIVNNSSHNATALNNYQNLLRQNSMTTSQNALQQEASCSFGGSTQTPPCNSLQSPSHSIPFQGAALSSMPGTLQNTSLIGLSNSIQQNSVGGNLLQQTHPQSSQGNQPYPQQVIQQLLQEMMNTGGTSQQA
A9NUL7_______________MNSMHGNMNNHINNHVSGIVNNSSHNATALN-YQSLLRQNSMTTSQNALQQEASCSFGGPTQTPQCNSLQSPSHSIPFQGAALSSMPGTLQNTSLIGLSNSIQQNSVGGNLLQQTHPQSSQGNQPYPQQVIQQLLQEMMNSGGTSQQA

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
178		40		60	1.0
360	66		33		0.997452
784		25		75	0.996473
788	75		25		0.996473
790			25	75	0.996473
791	25			75	0.996473
792		25		75	0.996473
794	75			25	0.996473
796		75	25		0.996473
798			75	25	0.996473
800			75	25	0.996473
801	75	25			0.996473
803		33		66	0.997452
804	66			33	0.997452
805		33		66	0.997452
806	33			66	0.997452
952		66	33		0.997452
953		66		33	0.997452
959	66			33	0.997452
960		66	33		0.997452
962	66		33		0.997452
963	66			33	0.997452
964	66		33		0.997452
966	33	33		33	0.997753
967	33		33	33	0.997753
970	66	33			0.997452
1015	87		12		0.992554
1091	87	12			0.992554
1237			20	80	0.995493
1534		16		83	0.994512
1596	87			12	0.992554
1826		14	85		0.993533
1829	85	14			0.993533
1830		85	14		0.993533
1832			14	85	0.993533
1835	85			14	0.993533
1836	85			14	0.993533
1838	85		14		0.993533
1839		14		85	0.993533
1848	85	14			0.993533
1884			14	85	0.993533
1886		14		85	0.993533
1892		16		83	0.994512
1893	83	16			0.994512
1896		83		16	0.994512
1897		83	16		0.994512
1900	85			14	0.993533
1901	85		14		0.993533
1902			85	14	0.993533
1903	85	14			0.993533
1905		14		85	0.993533
1906			85	14	0.993533
1907		14		85	0.993533
1913		88		11	0.923564
1920		11	88		0.923564
1921			88	11	0.923564
1922		11	88		0.923564
2186	15		84		0.999986
2341	87			12	0.992554
2342	87			12	0.992554
2344	87		12		0.992554
2345		12		87	0.992554
2347	87		12		0.992554
2352	14		85		0.993533
2400	83		16		0.994512
2488	77	22			0.999999
2507		88	11		0.923564
2845			87	12	0.992554
2945		75		25	1.0
2953	12			87	0.992554
2969	12			87	0.992554
3084	88			11	0.923564
3085	88		11		0.923564
3086		88	11		0.923564
3087	88		11		0.923564
3725	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1425	1436	CAG CAG CAG CAG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain