SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10346

Length: 1233 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactose-1-phosphate uridylyltransferase n=1 Tax=Populus trichocarpa RepID=B9IPP8_POPTR	-	-	55%
FL-Next	sp=Probable galactose-1-phosphate uridyl transferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	galactose-1-phosphate uridylyltransferase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribose-5-phosphate adenylyltransferase.	EC:2.7.7.35	-	0.0	70%
Blast2go		EC:2.7.7.1-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	70%
Blast2go	positive regulation of cellular response to phosphate starvation	GO:0080040	Biological Process	70%
Blast2go	metal ion binding	GO:0046872	Molecular Function	70%
Blast2go	ribose-5-phosphate adenylyltransferase activity	GO:0047345	Molecular Function	70%
Blast2go	UTP:galactose-1-phosphate uridylyltransferase activity	GO:0017103	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Blast2go	Galactose-1-phosphate uridyl transferase, class I	IPR001937	-	70%
Blast2go	Galactose-1-phosphate uridyl transferase, N-terminal	IPR005849	-	70%
Blast2go	Galactose-1-phosphate uridyl transferase, C-terminal	IPR005850	-	70%
Blast2go	Histidine triad-like motif	IPR011146	-	70%
Blast2go	Histidine triad motif	IPR011151	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FK51

Fln msg: your sequence is shorter than subject: 231 - 351

Fln protein: GVVIETPEHSMTLANMPESSILRVLIAYKVRVQQLASNEIIKYIQVFKNHGVTAGASMRHSHSQIIGLPIVPSNVECRLNNAREYFTRTGKCNLCECLSREIQSRCRFIEESAHFIAFVPYAASLPFETWIAPKEHASHYQEIKDEQAMDLAYILKHILQKLDHQLANPPYNYMIHSSPLRETYEQSYSHWFIQIVPQLTRIGGFEIASGCYINPIFPENVATILREVKL*

Protein Length: 232

Fln nts: ATGGGGTAGTTATCGAGACTCCTGAACATTCTATGACTTTGGCAAACATGCCTGAATCAAGTATACTTCGTGTTTTAATTGCATATAAAGTAAGAGTTCAACAGCTTGCAAGCAACGAGATTATTAAATACATCCAGGTTTTCAAAAATCACGGAGTCACAGCAGGAGCATCAATGAGGCATTCTCACAGTCAGATCATTGGCCTTCCCATTGTCCCTAGTAATGTGGAATGCAGGCTTAATAATGCAAGGGAGTACTTTACCAGGACAGGAAAATGCAACCTCTGCGAGTGTTTGAGCAGGGAGATACAGTCCAGGTGCCGATTTATAGAAGAATCCGCACATTTCATTGCATTTGTTCCTTATGCAGCTTCACTTCCCTTTGAGACATGGATCGCTCCCAAGGAACACGCTTCTCATTACCAGGAGATAAAAGACGAACAGGCAATGGATCTAGCATATATATTGAAGCATATTCTGCAGAAGTTGGATCACCAATTGGCAAATCCACCATATAATTACATGATTCACTCCTCACCTCTTAGGGAGACATACGAGCAGTCATACTCTCATTGGTTCATACAGATTGTGCCTCAACTAACTCGAATTGGTGGGTTTGAAATTGCAAGTGGCTGTTACATTAATCCAATCTTTCCTGAAAATGTTGCTACAATTCTACGAGAAGTGAAATTGTAA___AATCAGTGAGCCAATAGTGCTTCCTGTATTCAGAGAAATAAACAAGTTATTGTCATGATTTTTCTGTGGAGGTATCTGTTCGTATCATACATAGATCTTCAATATGTCACAGATAGTAGATTTGGATTGACATGTACTTGAGGAAACTTTTCCATATTTGAATAATCAGATTTAATTATGATATTCTTCAGCATAAAAGAAAACCTTTAAGCAGGACAGACTGTCCTCTTGCTTCTATAAAAGTATGTATCACAATTGGTGAAAGATTTATTTTCGGCTATCAACCTACTAAAAGGTGGCATTTGTTGGGTTGAGTTATTCTTTGACCTGTTTGATGGATATGGTTCCCTTTTAAGTGTGGCAGACTTCTCCTCCTTTCCTTCCAGGGAAATATCATCAAAATTTCTTTGCCAAAGTTTAAGGCTTAATTGCAGTCCCTTTTTCTACGGTGGTTTTAGTGCTTTTCCATGGTTCTCACAACATGCTTTTTTCTGACATGTAAAACCGATGTTCTGAAAAGTTAATACTATTTTCAACT

Fln Alignment:

sp_v1.1_unigene10346___VVIETPEHSMTLANMPESSILRVLIAYKVRVQQLASNEIIKYIQVFKNHGVTAGASMRHSHSQIIGLPIVPSNVECRLNNAREYFTRTGKCNLCECLSREIQSRCRFIEESAHFIAFVPYAASLPFETWIAPKEHASHYQEIKDEQAMDLAYILKHILQKLDHQLANPPYNYMIHSSPLRETYEQ-SYSHWFIQIVPQLTRIGGFEIASGCYINPIFPENVATILREVKL
Q9FK51_______________VVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEETGKCCLCEAKSKHF-----VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
524	88			11	0.923564
526	88		11		0.923564
532		88	11		0.923564
533	88		11		0.923564
537		88	11		0.923564
579		12	87		0.992554
580			12	87	0.992554
583	87		12		0.992554
587	87			12	0.992554
589	87		12		0.992554
590		12		87	0.992554
594		12	87		0.992554
595	12	87			0.992554
698	87	12			0.992554
699	87		12		0.992554
700	87			12	0.992554
701	87		12		0.992554
702	12			87	0.992554
704	87	12			0.992554
705			85	14	0.993533
711		85		14	0.993533
712	85		14		0.993533
713	85			14	0.993533
714		14		85	0.993533
716		14	85		0.993533
718		14	85		0.993533
719	14	85			0.993533
722		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain