SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10138

Length: 2128 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10138
ATGGGGAACAAAATCCATATCACTTACCCTCTCCTTTGGACCATAGTGAAAATAATAAGCCCGAAAAACCGCTTACAGCACGAAATTCAAATTCAATTTCACGGGACTTCAAACAAGCCGTCTTTCACTGCATACTCCCTTTCCCGCAAAACACAAACCAAACACGTTAAACTCTAACCCAAAGCTTCTCGCAATTCTTACCAAATACAGTTACTCTGAGCCAAAACCCTTGGCGGGAAAACCCCAGTTAGGAGCTTCCGGCCATGGCGAAGGACGAAGAAGAATTCCGCGGCGAGATGGAGGAGCGCCTGGTGAACGAAGAGTACAAAATCTGGAAGAAAAATACGCCGTTTCTTTACGATCTGGTGATAACGCACGCCCTCGAATGGCCTTCACTCACTGTACAGTGGCTCCCGGACCGCGAAGAGCCCCCTGGAAAAGATTACTCCGTTCAGAAAATGATACTGGGGACTCATACTTCCGACAACGAGCCCAACTATCTGATGCTGGCCCAAGTTCAACTCCCGCTAGAGGATGCAGAGAATGACGCCAGGCAGTATGACGACGAGCGCGGGGAGATTGGAGGGTTCGGCTGCGCTAATGGCAAGGTACAAGTAATACAGCAAATCAATCACGATGGAGAGGTCAATAGAGCCCGATACATGCCACAAAATCCTTTCATTATTGCCACGAAAACAGTTAGTGCAGAAGTCTATGTGTTTGACTACAGCAAGCATCCTTCAAAGCCTCCTCAAGATGGTGGCTGTAATCCTGATCTCAGATTGAGGGGTCATAATACAGAAGGTTATGGTTTATCATGGAGCCCTTTTAAGCATGGCCATCTTTTAAGTGGTTCAGACGATGCACAAATCTGTTTGTGGGACATTAATGTACCTGCCAAAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTTGGGTCTGTTGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATATATACCATGACGAGGAGGATATGCTTCCTGAAGAAGCAGTGTAACTTTTATCTAGCTAGAAGTCGTGAAATTAAGAGGGATGTGAGGATTGGGTTATAGCTTGTGTAGCTGAAGATAACGTTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAAGAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAGAAGCAAAACTTGGCTTATCATCTTTTTTATTGAGAAAAGACACGTTGAAAGAGATTAAACCTTTAGCTTTTGCTGTTTTCTGCTGTATTTATGTAGTTTGCAATCTGGTGAAGATTATGCCAGGTCTGCCTTTCCTTGTAATAGGTTTTATAGACAAATTTCTAGCTGAAAGTGATGCTCACGTTCTAGGTAAGATGGGAAACATCAGAATGTAAGGGTCTCAAATGTTGTCACTATTCAATTTTCATCTATTTCTGGTCTGGTGGATTTTGCTGGTAAGATATTTGAAGATGTCCAACACTTGTTCTAAGTGTGTTGTGAAATATAAGCACATAACTTGATATGAGTTGTC

Ace file of the UniGene sp_v1.1_unigene10138

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat-containing protein MSI1 n=13 Tax=core eudicotyledons RepID=MSI1_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	multicopy suppressor of ira1	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	92%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	92%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	regulation of flower development	GO:0009909	Biological Process	92%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	92%
Blast2go	seed coat development	GO:0010214	Biological Process	92%
Blast2go	pollen development	GO:0009555	Biological Process	92%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	92%
Blast2go	cell proliferation	GO:0008283	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	92%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	92%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	92%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	92%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	92%
Blast2go	WD40-repeat-containing domain	IPR017986	-	92%
Blast2go	WD40 repeat, conserved site	IPR019775	-	92%
Blast2go	WD40 repeat, subgroup	IPR019781	-	92%
Blast2go	WD40 repeat 2	IPR019782	-	92%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	92%
Blast2go	Histone-binding protein RBBP4	IPR022052	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg:

Fln protein: MAKDEEEFRGEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV*

Protein Length: 423

Fln nts: ATGGGGAACAAAATCCATATCACTTACCCTCTCCTTTGGACCATAGTGAAAATAATAAGCCCGAAAAACCGCTTACAGCACGAAATTCAAATTCAATTTCACGGGACTTCAAACAAGCCGTCTTTCACTGCATACTCCCTTTCCCGCAAAACACAAACCAAACACGTTAAACTCTAACCCAAAGCTTCTCGCAATTCTTACCAAATACAGTTACTCTGAGCCAAAACCCTTGGCGGGAAAACCCCAGTTAGGAGCTTCCGGCC_-_ATGGCGAAGGACGAAGAAGAATTCCGCGGCGAGATGGAGGAGCGCCTGGTGAACGAAGAGTACAAAATCTGGAAGAAAAATACGCCGTTTCTTTACGATCTGGTGATAACGCACGCCCTCGAATGGCCTTCACTCACTGTACAGTGGCTCCCGGACCGCGAAGAGCCCCCTGGAAAAGATTACTCCGTTCAGAAAATGATACTGGGGACTCATACTTCCGACAACGAGCCCAACTATCTGATGCTGGCCCAAGTTCAACTCCCGCTAGAGGATGCAGAGAATGACGCCAGGCAGTATGACGACGAGCGCGGGGAGATTGGAGGGTTCGGCTGCGCTAATGGCAAGGTACAAGTAATACAGCAAATCAATCACGATGGAGAGGTCAATAGAGCCCGATACATGCCACAAAATCCTTTCATTATTGCCACGAAAACAGTTAGTGCAGAAGTCTATGTGTTTGACTACAGCAAGCATCCTTCAAAGCCTCCTCAAGATGGTGGCTGTAATCCTGATCTCAGATTGAGGGGTCATAATACAGAAGGTTATGGTTTATCATGGAGCCCTTTTAAGCATGGCCATCTTTTAAGTGGTTCAGACGATGCACAAATCTGTTTGTGGGACATTAATGTACCTGCCAAAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTTGGGTCTGTTGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATATATACCATGACGAGGAGGATATGCTTCCTGAAGAAGCAGTGTAA___CTTTTATCTAGCTAGAAGTCGTGAAATTAAGAGGGATGTGAGGATTGGGTTATAGCTTGTGTAGCTGAAGATAACGTTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAAGAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAGAAGCAAAACTTGGCTTATCATCTTTTTTATTGAGAAAAGACACGTTGAAAGAGATTAAACCTTTAGCTTTTGCTGTTTTCTGCTGTATTTATGTAGTTTGCAATCTGGTGAAGATTATGCCAGGTCTGCCTTTCCTTGTAATAGGTTTTATAGACAAATTTCTAGCTGAAAGTGATGCTCACGTTCTAGGTAAGATGGGAAACATCAGAATGTAAGGGTCTCAAATGTTGTCACTATTCAATTTTCATCTATTTCTGGTCTGGTGGATTTTGCTGGTAAGATATTTGAAGATGTCCAACACTTGTTCTAAGTGTGTTGTGAAATATAAGCACATAACTTGATATGAGTTGTC

Fln Alignment:

sp_v1.1_unigene10138___MAKDXXXXXXXXXXRLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINVPAKNRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMLPEEAV
B8LS29_______________MAKDEEEFRGEMEERLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINAPAKNKVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMPPEETL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
134	90			10	0.90298
138	10	90			0.90298
814		14		85	0.993533
996			20	80	0.995493
1001		80		20	0.995493
1031	16			83	0.994512
1033			16	83	0.994512
1035		66	16	16	0.988813
1081	85		14		0.993533
1082	85			14	0.993533
1083		14	85		0.993533
1088		14	85		0.993533
1089		14	85		0.993533
1092	85		14		0.993533
1093	85		14		0.993533
1099	14			85	0.993533
1100		14		85	0.993533
1101			85	14	0.993533
1230	87		12		0.992554
1319		10		90	0.90298
1462	87	12			0.992554
1546	90		10		0.90298
1548			10	90	0.90298
1694			10	90	0.90298
1695			10	90	0.90298
1747	17	5		76	1.0
1996		90		10	0.90298
2023	87			12	0.992554
2025		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain