SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9991

Length: 829 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9991

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isoform 2 of Monogalactosyldiacylglycerol synthase 1, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=O81770-2	-	-	68%
FL-Next	Isoform 2 of Monogalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=MGD1	-	-	68%
Blast2go	mgdg synthase type a	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Monogalactosyldiacylglycerol synthase.	EC:2.4.1.46	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	82%
Blast2go	galactolipid biosynthetic process	GO:0019375	Biological Process	82%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	82%
Blast2go	1,2-diacylglycerol 3-beta-galactosyltransferase activity	GO:0046509	Molecular Function	82%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Diacylglycerol glucosyltransferase, N-terminal	IPR009695	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
104	66		33		0.997452
105	66		33		0.997452
106			33	66	0.997452
201	50		50		1.0
203	75		25		0.996473
413	66	33			0.997452
414	33		66		0.997452
446	66		33		1.0
450	66			33	1.0
454	66	33			1.0
462			66	33	1.0
463	66	33			1.0
465	66	33			1.0
466			66	33	1.0
467		33		66	1.0
468	33		66		1.0
595		85	14		0.993533
596		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain