SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9963

Length: 431 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9963
GTAAAAATACTAGGAAGGAGAAAATATCGTAAATAAACAGCCAGGACGAGTAATCTCTTAAAGTTTGGTGGAGAAGGGGCTTTTATTGATCCCTTGTCATGTCTTCCCTTAGCAGAGAACTGGTTTTCCTCATCTTGCAGTTCCTGGATGAAGAAAAATTTAAGGAGACTGTTCACAAGCTTGAACAAGAATCGGGCTTTTTCTTTAATATGAAGTACTTCGAGGATGAAGTGCAGGGTGGAAACTGGGAGGAGGTGGAGAGGTATCTTTCCGGGTTCACGAAAGTGGACGATAACCGATACTCCATGAAAATATTTTTCGAGATTCGGAAGCAGAAGTATCTAGAGGCGTTGGACAAGCAAGACCGAGCAAAAGCAGTGGAAATTCTAGTGAAAGACCTGAAGGTGTTTTCTTCTTTCAATGAAGAGCTG

Ace file of the UniGene sp_v1.1_unigene9963

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TPL; TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	tpl protein binding protein homodimerization transcription repressor	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	96%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	96%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	96%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	96%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	96%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LisH dimerisation motif	IPR006594	-	0.0	96%
Blast2go	CTLH, C-terminal LisH motif	IPR006595	-	0.0	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACF1

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 111 - 178

Fln protein: MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVQGGNWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVEILVKDLKVFSSFNEEL

Protein Length: 112

Fln nts: GTAAAAATACTAGGAAGGAGAAAATATCGTAAATAAACAGCCAGGACGAGTAATCTCTTAAAGTTTGGTGGAGAAGGGGCTTTTATTGATCCCTTGTC_-_ATGTCTTCCCTTAGCAGAGAACTGGTTTTCCTCATCTTGCAGTTCCTGGATGAAGAAAAATTTAAGGAGACTGTTCACAAGCTTGAACAAGAATCGGGCTTTTTCTTTAATATGAAGTACTTCGAGGATGAAGTGCAGGGTGGAAACTGGGAGGAGGTGGAGAGGTATCTTTCCGGGTTCACGAAAGTGGACGATAACCGATACTCCATGAAAATATTTTTCGAGATTCGGAAGCAGAAGTATCTAGAGGCGTTGGACAAGCAAGACCGAGCAAAAGCAGTGGAAATTCTAGTGAAAGACCTGAAGGTGTTTTCTTCTTTCAATGAAGAGCTG

Fln Alignment:

sp_v1.1_unigene9963___MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVQGGNWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVEILVKDLKVFSSFNEEL
D5ACF1______________MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVRAGEWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKQDRERAVEILAKDLKVFSSFNEEL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
67		25	75		0.996473
70		25	75		0.996473
72	75			25	0.996473
76	75	25			0.996473
77			75	25	0.996473
78			75	25	0.996473
83			25	75	0.996473
85		25		75	0.996473
90	25			75	0.996473
254	33		66		1.0
402	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain