SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9305

Length: 654 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9305

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HEN1; HEN1 (HUA ENHANCER 1); RNA methyltransferase	-	-	2.0e-18	50%
FL-Next	sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	hen1 protein	-	-	1.61357e-21	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	1.61357e-21	62%
Blast2go	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	1.61357e-21	62%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	1.61357e-21	62%
Blast2go	regulation of flower development	GO:0009909	Biological Process	1.61357e-21	62%
Blast2go	specification of floral organ identity	GO:0010093	Biological Process	1.61357e-21	62%
Blast2go	production of siRNA involved in RNA interference	GO:0030422	Biological Process	1.61357e-21	62%
Blast2go	RNA methyltransferase activity	GO:0008173	Molecular Function	1.61357e-21	62%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.61357e-21	62%
Blast2go	nucleus	GO:0005634	Cellular Component	1.61357e-21	62%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
218			25	75	0.996473
354	22		77		0.999999
370		25		75	1.0
387	90		10		0.90298
391	90	10			0.90298
394		90	10		0.90298
395	90		10		0.90298
396	90	10			0.90298
397	90			10	0.90298
398		90	10		0.90298
400		10		90	0.90298
401	10			90	0.90298
402		10	90		0.90298
404	10		90		0.90298
407			10	90	0.90298
409	10			90	0.90298
410	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain