SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9221

Length: 1274 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9221

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	79%
Blast2go	dna polymerase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase, family A, palm domain	IPR001098	-	0.0	87%
Blast2go	DNA polymerase A	IPR002298	-	0.0	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H1W3

Fln msg: your sequence is shorter than subject: 347 - 889

Fln protein: GGQKGRDACHAITALCEVSSINTLISNFLQPLQGKEISGQKGRVHCSLNINTETGRLSARKPNLQNQPALEKDRYKIRRAFIAEQGNSLIVADYGQLELRILAHLSTCKSMLDAFKAGGDFHSRTAMNMYPHVREAVEKGEVLLEWDPQPGEEKPPIPLLKDLYATERRKAKMLNFSIAYGKTAIGLSKDWKVSEEEAKETVKLWYNERQEVLKWQHERKNEARTRQCVHTLLGRARHFPNMKSASSSLKGHIERAAINTPVQGSAADVAMCAMLEISNNSRLKDLGWKLLLQVHDEVILEGPTESSEEAKTLVVKCMSYPFSGKNILQVDLAVDAKCALNWYEGK*

Protein Length: 348

Fln nts: AGGTGGTCAAAAGGGGAGGGATGCCTGTCATGCTATTACTGCTCTATGTGAAGTGTCTTCAATCAACACTTTGATTTCCAACTTTCTTCAGCCATTACAGGGAAAAGAGATATCAGGTCAAAAGGGAAGAGTGCATTGTTCATTAAATATCAACACTGAAACTGGTCGCTTATCTGCAAGGAAACCAAACCTACAGAATCAACCTGCATTGGAGAAAGACCGCTATAAAATTCGTCGAGCATTTATTGCTGAACAAGGCAACTCTCTTATTGTTGCTGATTATGGGCAGTTGGAGTTGAGGATTCTTGCTCATCTTTCAACCTGCAAGAGTATGCTTGATGCTTTTAAAGCTGGAGGGGATTTTCATTCAAGAACTGCCATGAATATGTATCCCCATGTACGTGAAGCTGTTGAGAAAGGGGAAGTCCTACTTGAGTGGGATCCACAACCTGGTGAAGAAAAACCTCCAATTCCTTTACTGAAGGATCTTTATGCCACGGAAAGAAGGAAGGCAAAGATGCTGAACTTTTCCATAGCATATGGAAAGACAGCAATAGGACTCTCCAAGGACTGGAAGGTTTCAGAAGAGGAGGCTAAGGAGACTGTAAAACTCTGGTACAATGAAAGGCAAGAAGTCTTGAAGTGGCAGCATGAGCGTAAGAATGAAGCACGTACAAGGCAGTGTGTACATACCTTGCTTGGACGTGCTCGCCACTTTCCTAATATGAAATCTGCCAGTTCTTCACTAAAAGGTCACATTGAAAGGGCAGCCATCAATACTCCTGTTCAGGGTAGTGCAGCAGATGTGGCAATGTGTGCTATGTTGGAAATATCCAACAATAGTCGATTGAAGGATCTTGGTTGGAAGTTGTTGTTGCAGGTGCATGATGAAGTGATTTTGGAGGGGCCCACGGAAAGTTCTGAGGAAGCAAAAACCTTGGTTGTTAAGTGCATGTCCTACCCTTTCAGTGGAAAAAATATCCTTCAAGTCGACTTAGCAGTTGATGCCAAATGTGCCTTAAATTGGTACGAAGGTAAGTAA___CCTGATTCAGTTTTACTCAGGTTTTACGTAGCATCTATGGTTTAGGGCTAAAAGGATTAAGCCCATAACTATTATCAAGTGGGACCTGGTCTCTCCTTTCTCTGAAAAATATGCAAAGAAATTGCATTCAAGTTGATGCAAAATGGGTTGATGATGAGTTTTCTGCAAAGTGTGCGACTACCACCAGGTATGGTTGGTTTGATATTTTGAACCTACAGGATGCTTTAGTTAC

Fln Alignment:

sp_v1.1_unigene9221___GQKGRDACHAITALCEVSSINTLISNFLQPLQGKEISGQKGRVHCSLNINTETGRLSARKPNLQNQPALEKDRYKIRRAFIAEQGNSLIVADYGQLELRILAHLSTCKSMLDAFKAGGDFHSRTAMNMYPHVREAVEKGEVLLEWDPQPGEEKPPIPLLKDLYATERRKAKMLNFSIAYGKTAIGLSKDWKVSEEEAKETVKLWYNERQEVLKWQHERKNEARTRQCVHTLLGRARHFPNMKSASSSLKGHIERAAINTPVQGSAADVAMCAMLEISNNSRLKDLGWKLLLQVHDEVILEGPTESSEEAKTLVVKCMSYPFSGKNILQVDLAVDAKCALNWYEGK
F6H1W3______________GQEGRKACHAIAALCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNWYSAK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
402	20		80		0.995493
616		33		66	0.997452
1129		75		25	0.996473
1130		75	25		0.996473
1131			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain