SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9105

Length: 2220 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9105
ATGGGGAATTTATGGTGCCAGAATCTAAATCCATTGAAAATCCTCCAGGATTCTATTGGCGTACTTGTACAGTCACAAGTTAGCCTTTTCCTAGAGAGTAGGAATATATGATTTGGCACTTCATCGTTACTTGAACTTTGCAACTCCGGTAGTCTGCCACATCTACTACCGGTGTCAATCCTTATTAATTATCTCTCTGTATTTCTTGCAGAAATCAGTGAAAGGGGTTCCATCGAAAGGGAAAGGCAGTGAAGATGGCGCCCTGGATTGCCCTCCGATCGGCCATGCGTCGCCAGTTACCTTTCTTGACAAGACAAATTGTGATTGGTGCTGAAGAGGTAGAGTCACAAAGATTTTCTGTGGCTACCAGATGGAACAGTTCAGTGGCATCTGCACAGGAGGGCGTGACAGACTCTCTTGGTGCACCTGTTCTGGAACCAAATGATGCCAAGGCACAGAAGGAAGTTTCAGATTCTATGGAGCAAAAGGTTCCAAAAGAGAAATACAAAGGACATCACATGCTTTCCCCATTCACTGCAGGATGGCAGAGTTCAGATACACATCCATTGATAATTGACAAATCTGAGGGTGTTTTTGTATATGATACTAATGGGAATAAGTATCTTGATGCACTTGCAGGCCTTTGGTGCAATCCTTTGGGAGGAAATGAACCACGTCTTGTAGCGGCTGCTACAGAACAACTCAATAAGTTGCCCTTTTATCACTCATTTTGGAACCGTACCACTCAGCCTTCATTGGACCTTGCTAAGGAAGTTCTTGAAACATTCAAAGCAAATAAAATGAGCAAGGTCTTTTTTACAAACGGTGGTTCAGATGCCAATGATAGTCAGGTGAAGCTGGTGTGGTATTACAACAACGCCTTGGGAAGACCCAAGAAGAAGAAATTTATTGCTCGGCAGAAATCGTACCATGGATCAACATTGATAGCAGCAAGTCTTTCAGGGCTAACAAATCTTCATCAAAATTTTGATTTACCATTGCCATTTGTGCTGCATACAGACTGCCCCCACTATTGGCGCTATCATTTGCCAGGTGAGACTGAAGAAGACTTTGCAACGAGGTTAGCAGATAACTTGGAAAAGCTTATATTAAAAGAAGGTCCAGAAACGATTGCTGCATTCATTGCAGAACCTGTCATGGGTGCTGGTGGAGTCATTCCGCCCCCTGCCACATATTTTGAAAAGGTGCAAGCAGTTGTAAAGAAATATGACATCTTATTTATTGCAGATGAAGTTATATGTGCCTTTGGAAGGTTGGGAACAATGTTTGGATGTGACAAGTACAATATTAAGCCAGACCTTGTCTCAATAGCTAAAGCTCTTTCATCTTCATACATGCCCATAGGTGCAATGTTGGTAGGCAAAGAGGTTGCTGATGTTGTTCTTTCTGAAAGCAACAAACTTGGTTCCTTTGCACATGGCTTTACTTACTCCGGGCACCCTGTAGCATGTGCTGTTGCATTGGAGGCTTTGAAGATATACAAGGAAAGAAATTTGGTTGACCATGTTCGGAAGATTTCCCCACTATTCCAAGATGGCATGAGGCATTTGGCCAAGAGCCCCATTATTGGAGAGATGCGTGGAACAGGACTGATCATGGGAGTAGAATTTACAGATAACAAGTCACCTAATGATGTCTTCCCACCTGAATGGGGCGTAGGAGCATACTTTGGAGCTCAATGTGCAGAGCGGGGAATGTTGGTGCGCGTTGCTGGTGATACCATCATGATGTCCCCTCCATACATCATGCAACCTGAAAATTTTCAACAACTGATCCACATCTTTGGGGAAGCCCTAAAGAGTACGGAGGAGCGGATTCAATATCTTAAATCTCAACGTAACAAATAAATATTTCTCAGGTCGTAATGCCAATAAAGAAAATTGAAATGGTTACGACGTCATCTTCAACCATGTAAATAGTTTGAGATTTTCAAGAAGTTGAAGTAACAAATAAATATTTCTCAGGTCGTAATGCCAATAAAGAAAATTGAAATGGTTACGACGTCATCTTCAACCATGTAAATAGTTTGAGATTTTCAAGAAGTTGATGTTGAAGCTGATATACCTATAATGCGCATTTGATCTATATATTAAATTATGATTAAGAAGTTGATGTTGAAGCTGATATACCTATAATGCATTTGATCTATATATTAAATTATGATTAATGTTTATTTCCATTGCTATTCACAACTTTCCA

Ace file of the UniGene sp_v1.1_unigene9105

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	4-aminobutyrate:pyruvate transaminase (EC:2.6.1.19)	-	-	78%
FL-Next	tr=Ornithine aminotransferase; Pinus sylvestris (Scots pine).	-	-	27%
Blast2go	aminotransferase y4ub	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	86%
Blast2go	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	86%
Blast2go	glutamate decarboxylation to succinate	GO:0006540	Biological Process	86%
Blast2go	pollen tube adhesion	GO:0009865	Biological Process	86%
Blast2go	fruit development	GO:0010154	Biological Process	86%
Blast2go	shoot system development	GO:0022621	Biological Process	86%
Blast2go	beta-alanine catabolic process	GO:0019484	Biological Process	86%
Blast2go	pollen tube growth	GO:0009860	Biological Process	86%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	86%
Blast2go	response to organic substance	GO:0010033	Biological Process	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	86%
Blast2go	4-aminobutyrate:pyruvate transaminase activity	GO:0034387	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q1RPP3

Fln msg: your sequence is longer than subject: 538 - 468

Fln protein: MAPWIALRSAMRRQLPFLTRQIVIGAEEVESQRFSVATRWNSSVASAQEGVTDSLGAPVLEPNDAKAQKEVSDSMEQKVPKEKYKGHHMLSPFTAGWQSSDTHPLIIDKSEGVFVYDTNGNKYLDALAGLWCNPLGGNEPRLVAAATEQLNKLPFYHSFWNRTTQPSLDLAKEVLETFKANKMSKVFFTNGGSDANDSQVKLVWYYNNALGRPKKKKFIARQKSYHGSTLIAASLSGLTNLHQNFDLPLPFVLHTDCPHYWRYHLPGETEEDFATRLADNLEKLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSIAKALSSSYMPIGAMLVGKEVADVVLSESNKLGSFAHGFTYSGHPVACAVALEALKIYKERNLVDHVRKISPLFQDGMRHLAKSPIIGEMRGTGLIMGVEFTDNKSPNDVFPPEWGVGAYFGAQCAERGMLVRVAGDTIMMSPPYIMQPENFQQLIHIFGEALKSTEERIQYLKSQRNK*

Protein Length: 539

Fln nts: ATGGGGAATTTATGGTGCCAGAATCTAAATCCATTGAAAATCCTCCAGGATTCTATTGGCGTACTTGTACAGTCACAAGTTAGCCTTTTCCTAGAGAGTAGGAATATATGATTTGGCACTTCATCGTTACTTGAACTTTGCAACTCCGGTAGTCTGCCACATCTACTACCGGTGTCAATCCTTATTAATTATCTCTCTGTATTTCTTGCAGAAATCAGTGAAAGGGGTTCCATCGAAAGGGAAAGGCAGTGAAG_-_ATGGCGCCCTGGATTGCCCTCCGATCGGCCATGCGTCGCCAGTTACCTTTCTTGACAAGACAAATTGTGATTGGTGCTGAAGAGGTAGAGTCACAAAGATTTTCTGTGGCTACCAGATGGAACAGTTCAGTGGCATCTGCACAGGAGGGCGTGACAGACTCTCTTGGTGCACCTGTTCTGGAACCAAATGATGCCAAGGCACAGAAGGAAGTTTCAGATTCTATGGAGCAAAAGGTTCCAAAAGAGAAATACAAAGGACATCACATGCTTTCCCCATTCACTGCAGGATGGCAGAGTTCAGATACACATCCATTGATAATTGACAAATCTGAGGGTGTTTTTGTATATGATACTAATGGGAATAAGTATCTTGATGCACTTGCAGGCCTTTGGTGCAATCCTTTGGGAGGAAATGAACCACGTCTTGTAGCGGCTGCTACAGAACAACTCAATAAGTTGCCCTTTTATCACTCATTTTGGAACCGTACCACTCAGCCTTCATTGGACCTTGCTAAGGAAGTTCTTGAAACATTCAAAGCAAATAAAATGAGCAAGGTCTTTTTTACAAACGGTGGTTCAGATGCCAATGATAGTCAGGTGAAGCTGGTGTGGTATTACAACAACGCCTTGGGAAGACCCAAGAAGAAGAAATTTATTGCTCGGCAGAAATCGTACCATGGATCAACATTGATAGCAGCAAGTCTTTCAGGGCTAACAAATCTTCATCAAAATTTTGATTTACCATTGCCATTTGTGCTGCATACAGACTGCCCCCACTATTGGCGCTATCATTTGCCAGGTGAGACTGAAGAAGACTTTGCAACGAGGTTAGCAGATAACTTGGAAAAGCTTATATTAAAAGAAGGTCCAGAAACGATTGCTGCATTCATTGCAGAACCTGTCATGGGTGCTGGTGGAGTCATTCCGCCCCCTGCCACATATTTTGAAAAGGTGCAAGCAGTTGTAAAGAAATATGACATCTTATTTATTGCAGATGAAGTTATATGTGCCTTTGGAAGGTTGGGAACAATGTTTGGATGTGACAAGTACAATATTAAGCCAGACCTTGTCTCAATAGCTAAAGCTCTTTCATCTTCATACATGCCCATAGGTGCAATGTTGGTAGGCAAAGAGGTTGCTGATGTTGTTCTTTCTGAAAGCAACAAACTTGGTTCCTTTGCACATGGCTTTACTTACTCCGGGCACCCTGTAGCATGTGCTGTTGCATTGGAGGCTTTGAAGATATACAAGGAAAGAAATTTGGTTGACCATGTTCGGAAGATTTCCCCACTATTCCAAGATGGCATGAGGCATTTGGCCAAGAGCCCCATTATTGGAGAGATGCGTGGAACAGGACTGATCATGGGAGTAGAATTTACAGATAACAAGTCACCTAATGATGTCTTCCCACCTGAATGGGGCGTAGGAGCATACTTTGGAGCTCAATGTGCAGAGCGGGGAATGTTGGTGCGCGTTGCTGGTGATACCATCATGATGTCCCCTCCATACATCATGCAACCTGAAAATTTTCAACAACTGATCCACATCTTTGGGGAAGCCCTAAAGAGTACGGAGGAGCGGATTCAATATCTTAAATCTCAACGTAACAAATAA___ATATTTCTCAGGTCGTAATGCCAATAAAGAAAATTGAAATGGTTACGACGTCATCTTCAACCATGTAAATAGTTTGAGATTTTCAAGAAGTTGAAGTAACAAATAAATATTTCTCAGGTCGTAATGCCAATAAAGAAAATTGAAATGGTTACGACGTCATCTTCAACCATGTAAATAGTTTGAGATTTTCAAGAAGTTGATGTTGAAGCTGATATACCTATAATGCGCATTTGATCTATATATTAAATTATGATTAAGAAGTTGATGTTGAAGCTGATATACCTATAATGCATTTGATCTATATATTAAATTATGATTAATGTTTATTTCCATTGCTATTCACAACTTTCCA

Fln Alignment:

sp_v1.1_unigene9105___PLIIDKSEGVFVYDTNGNKYLDALAGLWCNPLGGNEPRLVAAATEQLNKLPFYHSFWNRTTQPSLDLAKEVLETFKANKMSKVFFTNGGSDANDSQVKLV--WYYNNALGRPKKKKFIARQKSYHGSTLIAASLSGLTNLHQNFDLPLPFVLHTDCPHYWRYHLPGETEEDFATRLADNLEKLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSIAKALSSSYMPIGAMLVGKEVADVVLSESNKLGSFAHGFTYSGHPVACAVALEALKIYKERNLVDHVRKISPLFQDGMRHLAKS--PIIGEMRGTGLIMGVEFTDNKSPNDVFPPEWGVGAYFGAQ-CAERGMLVR-VAGDTIMMSPPYIMQPENFQQLIHIFGEALK
Q1RPP3______________PMVFSKAKDVHVWDPEGRKYLDFLSAYSAVNQGHCHEKILNALSQQAQQLTLSSRAFHNDIFPIF--AQHLTSMFGYEMILPM---NTGAEGVETALKLARKWGYEKKHIPKNEAIIISCCGCFHGRTTAVISMSCDNEATRGFG---PF-------------LPGLLKVDFGD--ADSLKSMFEAHG-DKVAGFLFEPIQGEAGVIVPPKGYLQSVRELCSKYNVLMIADEIQTGIGRTGKLLACEWESVRPDVVILGKALGGGVLPVSAVLADK---DIML--CFKPGE--HGSTFGGNPLASAVAIAALEIVEEEKLAERAAEMGQVFRSQFLDIQKAYPHIIKEVRGQGLLNAVELNAKGLST--------VSAFDICQRLKERGVLAKPTHGTIIRFSPPLTIRLKELTEASKAFKDVLE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1023	90		10		0.999898
1288	90		10		0.90298
1521			90	9	0.999842
1744	96		3		0.993591
1985		88		11	0.923564
2013		33		66	1.0
2033		83		16	0.994512
2039		50	50		1.0
2049	16		83		0.994512
2063	20		80		0.995493
2064	80		20		0.995493
2132	83			16	0.999991
2133	83			16	0.999991
2151	9	27			1.0
2201	25			75	0.996473
2214		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain