SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8665

Length: 495 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8665
AACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAAACCTCTTGTGTGTGCCATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAGAATCTACCCTATAATATATGTTCTCCCTATTCTCATTGTTCTTGATGAAAAATTTTTAACCTCAAGTCAGAGTCTTCGTCTCAGTAGTTGGAACACTAAACAACCAAGGTTATCAGATTCTGAATCAATATTCTCATGTATCAAAGCCATATTTAGGGTAAACTTAGGGCTCGTGTTAAAGGCACTCTTGAACAAACATAGAATACTATTTGGAATGTTATCTGGAGGGGTGTTCTTTTTCTTGACTGGTATTTTCTATTATTTATATGGAGAAAAATTCTTGAATGAAGCTCTGCTCTACCACCTCACACGTACTGAT

Ace file of the UniGene sp_v1.1_unigene8665 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI mannosyltransferase 1 n=3 Tax=Arabidopsis RepID=PIGM_ARATH	-	-	4.0e-37	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	mannosyltransferase-like protein	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	GPI anchor biosynthetic process	GO:0006506	Biological Process	67%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	67%
Blast2go	cell division	GO:0051301	Biological Process	67%
Blast2go	embryo development	GO:0009790	Biological Process	67%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	67%
Blast2go	transferase activity	GO:0016740	Molecular Function	67%
Blast2go	cell part	GO:0044464	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mannosyltransferase, DXD	IPR007704	-	0.0	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMK7

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 134 - 293

Fln protein: MILWILICLMRGHIVEAAIWYGLVVHFRIYPIIYVLPILIVLDEKFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGEKFLNEALLYHLTRTD

Protein Length: 135

Fln nts: AACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAAACCTCTTGTGTGTGCC_-_ATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAGAATCTACCCTATAATATATGTTCTCCCTATTCTCATTGTTCTTGATGAAAAATTTTTAACCTCAAGTCAGAGTCTTCGTCTCAGTAGTTGGAACACTAAACAACCAAGGTTATCAGATTCTGAATCAATATTCTCATGTATCAAAGCCATATTTAGGGTAAACTTAGGGCTCGTGTTAAAGGCACTCTTGAACAAACATAGAATACTATTTGGAATGTTATCTGGAGGGGTGTTCTTTTTCTTGACTGGTATTTTCTATTATTTATATGGAGAAAAATTCTTGAATGAAGCTCTGCTCTACCACCTCACACGTACTGAT

Fln Alignment:

sp_v1.1_unigene8665___MRGHIVEAAIWYGLVVHFRXXXXXXXXXXXXXLDEKFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGEKFLNEALLYHLTRTD
B8LMK7______________MRGHVVEAAIWYGLVVHFRIYPIIYVLPILIVLDEQYLTSSQSLRLSYWNTKQPRLSDSESIFLCIKAIFRVNLGLVLKKLLNKHRILFGMLSGGVFFLLTGIFYYLYGEKFLDEALLYHLTRTD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
268	25			75	0.996473
422			33	66	0.997452
423	33			66	0.997452
431			33	66	0.997452
432			33	66	0.997452
435	33	66			0.997452
437		66	33		0.997452
438	33			66	0.997452
439		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain