SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8661

Length: 2707 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8661
ACCACCTCACTCATGTCTGCCCTGCCTGAAATATTTCATTTGATAACGTAAGTATCACGCCTATGCAGATTCGATGGCTCCATTTAAACAGATGAAACTTGTCTGATTAGTAGTTTTTACATTATAGTATATTTAATGTTTGTTTGGCAGCACGTGGGAATTTCCTCATAAACGCCTCACAAAACACCCGTTGTGACCCAAATTTCTCATAAACGCCTCACAGAAACACCAATAGTCACCCAAATTTCTTCAGTAACGCCTCACAGAAGCACCAATAGTCACCCAATCAGTGTATATAAATAAACTTGAGGATCCGACTGGTTCTGCACTTCCAAACCATATTGTTTACACTTCGGAGCTATTCATAGTTGTGTGCAACTGCCGAAGCGAAATTGTTCAATCAATTCATCCATCAATGGCGGATAATCAACAGAGTACGAGTTTAATCGATGGCAACGGTGTAGCAGCGAAGGCGCTGGCGAGAGCGGGCATCGATCACATGTTCGGAGTGGTAGGCATTCCAGTGACATCCTTCGCCAATTGCTCAGTCAAGGAAGGTGTCCGCTTCATTGCTTCCCACAACGAACAATCTGCGGGCTACGCCGCGAGCGCCTTCGGGTATCTGACAGGCAAGCCTGGGGTCCTCTTGACGGTATCAGGGCCGGGGTGCGTCCATGGCCTTGCGGGACTTAGCAACGCTATGATCAATACGTGGCCCATGATCATGATAGCAGGCTCCTGCGACCAGGCGGACTTCGGGAAGGGCGATTTCCAGGAGCTCGACCAGCTGGAGGCCGTGAAGCCCTTTGTCAAATTCTCGGGTAAGGCTCGCAAAATTTCTGAAATTCCGTCTCTCGTTGCTCAAGCTGTGAATATCGCTGCCTCGGGCAGGCCCGGCGGATGCTACATAGATCTTCCTGCCGATGTTCTCCATGAGACTATTGATGAAAAAGAAGCAGATGAGCTCTTCGCAAAGATCGAACCCTTCGTGCCCGTTTGGTCTCGCCCCGGTTCGATTCCGGACCTCTGCGCTGTGGATTCGGATGTCCGGACTGCAGTTTCGTTGCTCCGGGAGGCGCAGAGGCCGTTGATCGTTGTGGGGAAGGGGGCTGCCTATGCTCGGGCAGAAGGGGCTTTGTCGGACCTGGTTCGGCTCAGCGGGATCCCATTCTTACCGACTCCAATGGGCAAGGGGCTTCTGCCTGATACCCACGAGCTCTCTGCAACCGCAGCCCGGTCGCTGGCAATCGGGCAGTGCGATGTTGCGTTAATTGTGGGGGCGAGGCTTAATTGGATGCTGCATTTTGGAGAGCCCCCGAGATGGTCTAAGGATGTGAAATTTATCCTGGTGGATGTCTCAGAGGAGGAGATGAAGGTGAGGAAGCCTTCTGTGGGGCTCATTGGGGATGCCAGGGTTGTTGTGCAACAGATTCTCAAGGAGGCTAAGGATGAACCGTTTAGCCTAGGAAGGAGTCATCCATGGGTGGAAAGAATTGTTGAGAAGGCCAAGGAGAATGTGAAAAAGATGGAATCTTATCTCGCAAAGGTCGTCGTGCCCTTCAATTTCCAGACCCCTATGAGAATTATTAGGGATGCCATTCTGGCCCAGGGATCTCCTGCCCCTATTGTGGTATCTGAAGGGGCAAATACCATGGATGTGGGGCGTTCAGTGCTGGTTCAGACAGAGCCCAGGACTCGGCTGGATGCGGGCACATGGGGGACGATGGGGGTTGGGCTGGGATATTGCATTGCTGCGGCGACGGCTTCTCCGGGGAGGCTTGTGGTGGCTGTGGAAGGAGACTCGGGGTTCGGTTTTAGTGGGTTGGAAGTTGAGACATTGGTCAGATACAAATTACCTGTTGTTGTCATCATCTTCAATAATGGTGGTGTCTATGGTGGAGATAGAAGGATTGCACAGGACATCCAAGGGCCTCACAAAGATGATCCTGCACCAACGTCATTTGTTCCAGGAGCAGGGTACCATACTATGATGGAAGCATTTGGTGGCAAAGGTTATCTTGTTGGCACTCCTCAGGAGCTTCAGTCTGCCCTCACAGAAGCCTTTTCAAAAAGGAACCCAGCAGTCATAAATGTAACCATAGATCCTTATGCAGGTGCTGAAAGTGGAAGAATGCAACACAAAAATTGAGATCAATCAATCAGGAGAGAGTGCACAAACTTGTAAATCGTGTTTCTGTGTTGTGCTTTTGGGAAGACTATTTCTCTCCCAAGAGGACATACATCCATATCTTCTTGTGATAAACTTATTGAAGTTTCTAGCCCAGATGTCAGTTCATGCTTAGGGTATTTTATGTCTTTCCTAGGTAGGGTGCTTTCTTTTTCCTAATCTGGGCACTCGTTAGCTTGCTAGTGAAACCTGGATTTTATCGCTGTATTATTTTGCTTTAGTTCTTATTCTCTTTAATAATAATTGAGGGTCAATTCTGCTGGCAGAACATGGAAATCATGTTGTTTGTTTTGAAATCAGTAAGGCTCTGCTCCTTAATGTTGCAATGACCTTTCCATTCAGCGGAGCCAATCTTTTTCAATGTCCTGTACATTGCAGATAAGCTTGAATATTACATCACAAGCCCTTTCTGTTGGTATTAGTGGACATATTATATGATATCAGAATCTCCGCAGAGATAAAGATTCCAGAAGCTTGGTGGCTCTATGTCATTTGATCAAGTTGGTGGCAATACCTGCG

Ace file of the UniGene sp_v1.1_unigene8661

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	OXC; oxalyl-CoA decarboxylase-like; K12261 2-hydroxyacyl-CoA lyase 1 [EC:4.1.-.-]	-	-	72%
FL-Next	sp=2-hydroxyacyl-CoA lyase; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	pyruvate decarboxylase family protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:4.1.-.-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	TPP-binding enzyme, conserved site	IPR000399	-	80%
Blast2go	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	80%
Blast2go	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	80%
Blast2go	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LF46

Fln msg:

Fln protein: MADNQQSTSLIDGNGVAAKALARAGIDHMFGVVGIPVTSFANCSVKEGVRFIASHNEQSAGYAASAFGYLTGKPGVLLTVSGPGCVHGLAGLSNAMINTWPMIMIAGSCDQADFGKGDFQELDQLEAVKPFVKFSGKARKISEIPSLVAQAVNIAASGRPGGCYIDLPADVLHETIDEKEADELFAKIEPFVPVWSRPGSIPDLCAVDSDVRTAVSLLREAQRPLIVVGKGAAYARAEGALSDLVRLSGIPFLPTPMGKGLLPDTHELSATAARSLAIGQCDVALIVGARLNWMLHFGEPPRWSKDVKFILVDVSEEEMKVRKPSVGLIGDARVVVQQILKEAKDEPFSLGRSHPWVERIVEKAKENVKKMESYLAKVVVPFNFQTPMRIIRDAILAQGSPAPIVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGTMGVGLGYCIAAATASPGRLVVAVEGDSGFGFSGLEVETLVRYKLPVVVIIFNNGGVYGGDRRIAQDIQGPHKDDPAPTSFVPGAGYHTMMEAFGGKGYLVGTPQELQSALTEAFSKRNPAVINVTIDPYAGAESGRMQHKN*

Protein Length: 579

Fln nts: ACCACCTCACTCATGTCTGCCCTGCCTGAAATATTTCATTTGATAACGTAAGTATCACGCCTATGCAGATTCGATGGCTCCATTTAAACAGATGAAACTTGTCTGATTAGTAGTTTTTACATTATAGTATATTTAATGTTTGTTTGGCAGCACGTGGGAATTTCCTCATAAACGCCTCACAAAACACCCGTTGTGACCCAAATTTCTCATAAACGCCTCACAGAAACACCAATAGTCACCCAAATTTCTTCAGTAACGCCTCACAGAAGCACCAATAGTCACCCAATCAGTGTATATAAATAAACTTGAGGATCCGACTGGTTCTGCACTTCCAAACCATATTGTTTACACTTCGGAGCTATTCATAGTTGTGTGCAACTGCCGAAGCGAAATTGTTCAATCAATTCATCCATCA_-_ATGGCGGATAATCAACAGAGTACGAGTTTAATCGATGGCAACGGTGTAGCAGCGAAGGCGCTGGCGAGAGCGGGCATCGATCACATGTTCGGAGTGGTAGGCATTCCAGTGACATCCTTCGCCAATTGCTCAGTCAAGGAAGGTGTCCGCTTCATTGCTTCCCACAACGAACAATCTGCGGGCTACGCCGCGAGCGCCTTCGGGTATCTGACAGGCAAGCCTGGGGTCCTCTTGACGGTATCAGGGCCGGGGTGCGTCCATGGCCTTGCGGGACTTAGCAACGCTATGATCAATACGTGGCCCATGATCATGATAGCAGGCTCCTGCGACCAGGCGGACTTCGGGAAGGGCGATTTCCAGGAGCTCGACCAGCTGGAGGCCGTGAAGCCCTTTGTCAAATTCTCGGGTAAGGCTCGCAAAATTTCTGAAATTCCGTCTCTCGTTGCTCAAGCTGTGAATATCGCTGCCTCGGGCAGGCCCGGCGGATGCTACATAGATCTTCCTGCCGATGTTCTCCATGAGACTATTGATGAAAAAGAAGCAGATGAGCTCTTCGCAAAGATCGAACCCTTCGTGCCCGTTTGGTCTCGCCCCGGTTCGATTCCGGACCTCTGCGCTGTGGATTCGGATGTCCGGACTGCAGTTTCGTTGCTCCGGGAGGCGCAGAGGCCGTTGATCGTTGTGGGGAAGGGGGCTGCCTATGCTCGGGCAGAAGGGGCTTTGTCGGACCTGGTTCGGCTCAGCGGGATCCCATTCTTACCGACTCCAATGGGCAAGGGGCTTCTGCCTGATACCCACGAGCTCTCTGCAACCGCAGCCCGGTCGCTGGCAATCGGGCAGTGCGATGTTGCGTTAATTGTGGGGGCGAGGCTTAATTGGATGCTGCATTTTGGAGAGCCCCCGAGATGGTCTAAGGATGTGAAATTTATCCTGGTGGATGTCTCAGAGGAGGAGATGAAGGTGAGGAAGCCTTCTGTGGGGCTCATTGGGGATGCCAGGGTTGTTGTGCAACAGATTCTCAAGGAGGCTAAGGATGAACCGTTTAGCCTAGGAAGGAGTCATCCATGGGTGGAAAGAATTGTTGAGAAGGCCAAGGAGAATGTGAAAAAGATGGAATCTTATCTCGCAAAGGTCGTCGTGCCCTTCAATTTCCAGACCCCTATGAGAATTATTAGGGATGCCATTCTGGCCCAGGGATCTCCTGCCCCTATTGTGGTATCTGAAGGGGCAAATACCATGGATGTGGGGCGTTCAGTGCTGGTTCAGACAGAGCCCAGGACTCGGCTGGATGCGGGCACATGGGGGACGATGGGGGTTGGGCTGGGATATTGCATTGCTGCGGCGACGGCTTCTCCGGGGAGGCTTGTGGTGGCTGTGGAAGGAGACTCGGGGTTCGGTTTTAGTGGGTTGGAAGTTGAGACATTGGTCAGATACAAATTACCTGTTGTTGTCATCATCTTCAATAATGGTGGTGTCTATGGTGGAGATAGAAGGATTGCACAGGACATCCAAGGGCCTCACAAAGATGATCCTGCACCAACGTCATTTGTTCCAGGAGCAGGGTACCATACTATGATGGAAGCATTTGGTGGCAAAGGTTATCTTGTTGGCACTCCTCAGGAGCTTCAGTCTGCCCTCACAGAAGCCTTTTCAAAAAGGAACCCAGCAGTCATAAATGTAACCATAGATCCTTATGCAGGTGCTGAAAGTGGAAGAATGCAACACAAAAATTGA___GATCAATCAATCAGGAGAGAGTGCACAAACTTGTAAATCGTGTTTCTGTGTTGTGCTTTTGGGAAGACTATTTCTCTCCCAAGAGGACATACATCCATATCTTCTTGTGATAAACTTATTGAAGTTTCTAGCCCAGATGTCAGTTCATGCTTAGGGTATTTTATGTCTTTCCTAGGTAGGGTGCTTTCTTTTTCCTAATCTGGGCACTCGTTAGCTTGCTAGTGAAACCTGGATTTTATCGCTGTATTATTTTGCTTTAGTTCTTATTCTCTTTAATAATAATTGAGGGTCAATTCTGCTGGCAGAACATGGAAATCATGTTGTTTGTTTTGAAATCAGTAAGGCTCTGCTCCTTAATGTTGCAATGACCTTTCCATTCAGCGGAGCCAATCTTTTTCAATGTCCTGTACATTGCAGATAAGCTTGAATATTACATCACAAGCCCTTTCTGTTGGTATTAGTGGACATATTATATGATATCAGAATCTCCGCAGAGATAAAGATTCCAGAAGCTTGGTGGCTCTATGTCATTTGATCAAGTTGGTGGCAATACCTGCG

Fln Alignment:

sp_v1.1_unigene8661___MADNQQSTS-LIDGNGVAAKALARAGIDHMFGVVGIPVTSFANCSVKEGVRFIASHNEQSAGYAASAFGYLTGKPGVLLTVSGPGCVHGLAGLSNAMINTWPMIMIAGSCDQADFGKGDFQELDQLEAVKPFVKFSGKARKISEIPSLVAQAVNIAASGRPGGCYIDLPADVLHETIDEKEADELFAKIEPFVPVWSRPGSIPDLCAVDSDVRTAVSLLREAQRPLIVVGKGAAYARAEGALSDLVRLSGIPFLPTPMGKGLLPDTHELSATAARSLAIGQCDVALIVGARLNWMLHFGEPPRWSKDVKFILVDVSEEEMKVRKPSVGLIGDARVVVQQILKEAKDEPFSLGRSHPWVERIVEKAKENVKKMESYLAKVVVPFNFQTPMRIIRDAILAQGSPAPIVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGTMGVGLGYCIAAATASPGRLVVAVEGDSGFGFSGLEVETLVRYKLPVVVIIFNNGGVYGGDRRIAQDIQGPHKDDPAPTSFVPGAGYHTMMEAFGGKGYLVGTPQELQSALTEAFSKRNPAVINVTIDPYAGAESGRMQHKN
Q9LF46______________MADKSETTPPSIDGNVLVAKSLSHLGVTHMFGVVGIPVTSLASRAMALGIRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNAWVNTWPMVMISGSCDQRDVGRGDFQELDQIEAVKAFSKLSEKAKDVREIPDCVSRVLDRAVSGRPGGCYLDIPTDVLRQKISESEADKLVDEVER-----SRKEE-PIRGSLRSEIESAVSLLRKAERPLIVFGKGAAYSRAEDELKKLVEITGIPFLPTPMGKGLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVSEEEIELRKPHLGIVGDAKTVIGLLNREIKDDPFCLGKSNSWVESISKKAKENGEKMEIQLAKDVVPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDVGRSVLVQKEPRTRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVETLVRYNLAVVIIVFNNGGVYGGDRRGPEEISGPHKEDPAPTSFVPNAGYHKLIEAFGGKGYIVETPDELKSALAESFAARKPAVVNVIIDPFAGAESGRLQHKN

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
258			33	66	0.997452
261	33	66			0.997452
310			50	50	1.0
312		50	50		1.0
313	50		50		1.0
314			50	50	1.0
317		50		50	1.0
320		50		50	1.0
322	50		50		1.0
326			50	50	1.0
327		50		50	1.0
328	50			50	1.0
331		50	50		1.0
332	50	50			1.0
345		16		83	0.994512
645			90	10	0.90298
736			22	77	0.999999
758	88			11	0.923564
764		11	88		0.923564
765	11		88		0.923564
766	88		11		0.923564
767	88			11	0.923564
769	11		88		0.923564
771		88		11	0.923564
774		11		88	0.923564
775	11			88	0.923564
776			11	88	0.923564
863		14		85	0.993533
1518		33	66		1.0
1570		16		83	0.994512
1613	83		16		0.994512
1736			14	85	0.993533
1738			87	12	0.992554
1744		10	90		0.90298
1748	90	10			0.90298
1749			10	90	0.90298
1753	90	10			0.90298
1760		88		11	0.923564
1761		11	88		0.923564
1762	11		88		0.923564
1764			88	11	0.923564
1765	88	11			0.923564
1766	11	88			0.923564
1774	10	90			0.90298
1775		90		10	0.90298
1828		28		64	1.0
1833	85			14	0.999981
1949	90		9		0.999872
1950			4	85	0.999726
1958		90		9	0.999872
1959	90	9			0.999872
2102		90		10	0.999898
2530	90		10		0.90298
2538		11	88		0.923564
2563	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain