SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8455

Length: 2250 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8455
TTGTGATGAAATTGATGGCAACAAGTTAGCTGTGCCTCCTACAGGCTCTCTCAAAGAGGAGCAACAGTGCAGTGCATGGAGGCGATTGCTTGCTTTTGAAAAGGGGAATCCTCAAAGGATAGATAGTGGATCTTCAGGCAAACGAGTTGCATTCACATATGAGCAGTGCCTTATGTATTTGTATCACTATCCAGATATTTGGTATGACTATGCGACATGGCATGCACGGAATGGATCAGTGGATTCTGCTATTAGAGTTTTTCAAAGAGCTTTGAAAGCTTTGCCAGATTCGGAAGTGTTACGATATGCTTATGCTGAACTGGAAGAGTGTCGTGGAGGAATTCAGGCATCTAAGAAAATATATGAGAATTTGTTGAGAAATAGTAGCACCGCAACAGCTTTAGGTTATATTCAGTTCCTTCGATTCATAAGGAGGACTGAAGGAGTTGAAGCAGCCCGTAAGTTCTTTACTGAGGCACGGAAATCTCCAAACTGCACGTACCAAGTCTTTGTTGCTTTATGCCATGATGGCGTTTTGTCTTGACAAGGATCCCAAGGTTGCACACAATGTTTTTGAAGCAGGGCTCAAGAGATTCATGCACGAGCCGGCATACATACTTGAATATGCAGATTTCCTTTGCCGCTTGAATGATGATATAAATGTCCGTGCATTATTTGAGCGAGCTCTCAGCCTTCTTCCACCAGAGGAGTCAACTGAGGTATGGAATCGTTTCATTAAATTTGAACAAACATATGGTGATCTAACAAGCATGTTAAAGGTAGAGCAGAGGAGAAAAGAAGCCCTTTCCAGAACAGGAGAAGAAGGATCAACAGCATTAGAGGGGTCATTGCTAGATGTTGTTTCTCGGTATTCTTTCATGGACCTTTGGCCATGCTCTTCAAGAGACTTGGACCATATTGCACGTCAGGAGTGGCTGGCTAAACACATGAATGAGAATATAAAGTCGCTTGCATCTTCTGCAAAGATAGTTCGTCCAGATTTATCTCGAATGGTTATCTATGATCCAAGGCAAAAGCCTGGTTCTGGATATTTTATGAATTCAATGATGCCAGGAGTTCCATCAATACCTGGATCGGTACAACATAATACCATCGCTGGCTCAGCATCAAAATCTCTTGATGATGCTCTAAGATATATGTCACCAACTTTGGTATCTTTCATAGTTCAGTTGCCAGTTGTCAATGGACCTTCACCAGATGTAGATATGGTAATTTCCGCATTGTTACAGAGTGACATTCCATCTGGTGTCAATGATAGTTCACTGCCTTTTTCTCATCCTTCATCAGCTTTGCCTGGGTCTAGTGCCACAGGAGATTTTCCAGCCTTAAGTAAAGGATGGCCTGTCTTAAATGGCTCAACAGCAAGGTCATCTAGAATCTTGCCAAACAAGAGAAAGGAATCTGAGAGACAAGAAGATGACGAAAATGTACCAGTCAATAGACCACTTCAGAAGGACATTTTTAGAATGCGTCAAATGCAAAGGGCTCGAGCTATGAACTCTGGTCAGGCAGGATCTACATCTGGAGGTAGTGGAGCACTTGCTGGAGAGCTGTCTGGTAGTACCGAATAATCTGCAAATGTATTCATTGTTTCTATTTATTTTATAAGATGTCTTGATCTGGTGGGAAATTTTCCTTCCATGTAAAGTATTTCATTGAAAGAGAAATCTAATTAATATCCAATCGTTGTGCAGCCTGTTTTTTAGTGCATTTGTTGTTTTTAATCATATATTTAGATAGAATTCCTGCAATGATTCATGTCTTCAATTATATTTCAGAGTTGAACTGTGTTTTTTCTACCTCTGTTTGAGGAAGAGTAACATTTCAGTGTTACAAAAGAGGATGAATAAAGTGTAACATATCATCATATGAAAAGTTGTATATTTATTCTGTTTTGGGGAGGCTTACTCAGTTGGTAATACTGTTCCAATATTAATTCCCTAGTGTTGTTACCATTTTCCACTGTTAATGGTTCGCTACCTTTAACACTCGGGCTCAGTTCTGATTCTTGCTAGAGGATTTCTGTCTTATGCACAACACTTTTTATCGAACAAGGTGAAGGACTTCATGATTATCATAAAGTACATTGTAAAAACAAATATATACAGAAAATAATGTCCTTTACAACATTTTAAGAGTTTGACGGCCATATATAAGACACATTGATTTAGATATACAATCCATTCCATACACCGGATCAGTGAATTCACAGCAGGGTGACGAACAGCT

Ace file of the UniGene sp_v1.1_unigene8455

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plant RNA cleavage stimulation factor, putative	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	77%
Blast2go	cleavage stimulation 3 pre- subunit 77kda	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	RNA 3'-end processing	GO:0031123	Biological Process	61%
Blast2go	mRNA binding	GO:0003729	Molecular Function	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA-processing protein, HAT helix	IPR003107	-	0.0	61%
Blast2go	Suppressor of forked	IPR008847	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H9L6

Fln msg: Separated hits, possible frame ERROR between 517 and 519, your sequence is shorter than subject: 531 - 905

Fln protein: CDEIDGNKLAVPPTGSLKEEQQCSAWRRLLAFEKGNPQRIDSGSSGKRVAFTYEQCLMYLYHYPDIWYDYATWHARNGSVDSAIRVFQRALKALPDSEVLRYAYAELEECRGGIQASKKIYENLLRNSSTATALGYIQFLRFIRRTEGVEAARKFFTEARKSPNCTYQVFVxxYAMMAFCLDKDPKVAHNVFEAGLKRFMHEPAYILEYADFLCRLNDDINVRALFERALSLLPPEESTEVWNRFIKFEQTYGDLTSMLKVEQRRKEALSRTGEEGSTALEGSLLDVVSRYSFMDLWPCSSRDLDHIARQEWLAKHMNENIKSLASSAKIVRPDLSRMVIYDPRQKPGSGYFMNSMMPGVPSIPGSVQHNTIAGSASKSLDDALRYMSPTLVSFIVQLPVVNGPSPDVDMVISALLQSDIPSGVNDSSLPFSHPSSALPGSSATGDFPALSKGWPVLNGSTARSSRILPNKRKESERQEDDENVPVNRPLQKDIFRMRQMQRARAMNSGQAGSTSGGSGALAGELSGSTE*

Protein Length: 532

Fln nts: TTGTGATGAAATTGATGGCAACAAGTTAGCTGTGCCTCCTACAGGCTCTCTCAAAGAGGAGCAACAGTGCAGTGCATGGAGGCGATTGCTTGCTTTTGAAAAGGGGAATCCTCAAAGGATAGATAGTGGATCTTCAGGCAAACGAGTTGCATTCACATATGAGCAGTGCCTTATGTATTTGTATCACTATCCAGATATTTGGTATGACTATGCGACATGGCATGCACGGAATGGATCAGTGGATTCTGCTATTAGAGTTTTTCAAAGAGCTTTGAAAGCTTTGCCAGATTCGGAAGTGTTACGATATGCTTATGCTGAACTGGAAGAGTGTCGTGGAGGAATTCAGGCATCTAAGAAAATATATGAGAATTTGTTGAGAAATAGTAGCACCGCAACAGCTTTAGGTTATATTCAGTTCCTTCGATTCATAAGGAGGACTGAAGGAGTTGAAGCAGCCCGTAAGTTCTTTACTGAGGCACGGAAATCTCCAAACTGCACGTACCAAGTCTTTGTTGCxxxTTATGCCATGATGGCGTTTTGTCTTGACAAGGATCCCAAGGTTGCACACAATGTTTTTGAAGCAGGGCTCAAGAGATTCATGCACGAGCCGGCATACATACTTGAATATGCAGATTTCCTTTGCCGCTTGAATGATGATATAAATGTCCGTGCATTATTTGAGCGAGCTCTCAGCCTTCTTCCACCAGAGGAGTCAACTGAGGTATGGAATCGTTTCATTAAATTTGAACAAACATATGGTGATCTAACAAGCATGTTAAAGGTAGAGCAGAGGAGAAAAGAAGCCCTTTCCAGAACAGGAGAAGAAGGATCAACAGCATTAGAGGGGTCATTGCTAGATGTTGTTTCTCGGTATTCTTTCATGGACCTTTGGCCATGCTCTTCAAGAGACTTGGACCATATTGCACGTCAGGAGTGGCTGGCTAAACACATGAATGAGAATATAAAGTCGCTTGCATCTTCTGCAAAGATAGTTCGTCCAGATTTATCTCGAATGGTTATCTATGATCCAAGGCAAAAGCCTGGTTCTGGATATTTTATGAATTCAATGATGCCAGGAGTTCCATCAATACCTGGATCGGTACAACATAATACCATCGCTGGCTCAGCATCAAAATCTCTTGATGATGCTCTAAGATATATGTCACCAACTTTGGTATCTTTCATAGTTCAGTTGCCAGTTGTCAATGGACCTTCACCAGATGTAGATATGGTAATTTCCGCATTGTTACAGAGTGACATTCCATCTGGTGTCAATGATAGTTCACTGCCTTTTTCTCATCCTTCATCAGCTTTGCCTGGGTCTAGTGCCACAGGAGATTTTCCAGCCTTAAGTAAAGGATGGCCTGTCTTAAATGGCTCAACAGCAAGGTCATCTAGAATCTTGCCAAACAAGAGAAAGGAATCTGAGAGACAAGAAGATGACGAAAATGTACCAGTCAATAGACCACTTCAGAAGGACATTTTTAGAATGCGTCAAATGCAAAGGGCTCGAGCTATGAACTCTGGTCAGGCAGGATCTACATCTGGAGGTAGTGGAGCACTTGCTGGAGAGCTGTCTGGTAGTACCGAATAATCTGCAAATGTATTCATTGTTTCTATTTATTTTATAAGATGTCTTGATCTGGTGGGAAATTTTCCTTCCATGTAAAGTATTTCATTGAAAGAGAAATCTAATTAATATCCAATCGTTGTGCAGCCTGTTTTTTAGTGCATTTGTTGTTTTTAATCATATATTTAGATAGAATTCCTGCAATGATTCATGTCTTCAATTATATTTCAGAGTTGAACTGTGTTTTTTCTACCTCTGTTTGAGGAAGAGTAACATTTCAGTGTTACAAAAGAGGATGAATAAAGTGTAACATATCATCATATGAAAAGTTGTATATTTATTCTGTTTTGGGGAGGCTTACTCAGTTGGTAATACTGTTCCAATATTAATTCCCTAGTGTTGTTACCATTTTCCACTGTTAATGGTTCGCTACCTTTAACACTCGGGCTCAGTTCTGATTCTTGCTAGAGGATTTCTGTCTTATGCACAACACTTTTTATCGAACAAGGTGAAGGACTTCATGATTATCATAAAGTACATTGTAAAAACAAATATATACAGAAAATAATGTCCTTTACAACATTTTAAGAGTTTGACGGCCATATATAAGACACATTGATTTAGATATACAATCCATTCCATACACCGGATCAGTGAATTCACAGCAGGGTGACGAACAGCT

Fln Alignment:

sp_v1.1_unigene8455___DEIDGNKLAVPPTGSLKEEQQCSAWRRLLAFEKGNPQRIDSGSSGKRVAFTYEQCLMYLYHYPDIWYDYATWHARNGSVDSAIRVFQRALKALPDSEVLRYAYAELEECRGGIQASKKIYENLLRNSSTATALGYIQFLRFIRRTEGVEAARKFFTEARKSPNCTYQVFVAxYAMMAFCLDKDPKVAHNVFEAGLKRFMHEPAYILEYADFLCRLNDDINVRALFERALSLLPPEESTEVWNRFIKFEQTYGDLTSMLKVEQRRKEALSRTGEEGSTALEGSLLDVVSRYSFMDLWPCSSRDLDHIARQEWLAKHMNENIKSLA--------------------SSAKIVRPDLSRMVIYDPRQKPGSGYFMNSMMPGVPSIPGSVQHNTIAGSASK---SLDDALRYMSPTLVSFIVQLPVVNGPSPDVDMVISALLQSDIPSGVNDSSLPFSHPSSALPGSSATGDFPALSKGWPVLNGSTARSSR-ILPNKRKESERQEDDENVPV-NRPLQKDIF
F6H9L6______________DEIDWNMLAVPPTGTSKEEMQWMAWKKFLAFEKGNPQRIDSNSSNKRILYTYEQCLMYLYHYPDIWYDYATWHARNGSIDAAIKVFQRASKALPDSDMLRYAYAELEESRGAIQPAKKIYESLLGDGVNATALVHIQFIRFLRRTEGVEAARKYFLDARKSPNCTYHVFVAxYAMMAFCLDKDPKVAHNVFEAGLKRFMHEPGYILEYADFLSRLNDDRNIRALFERALSSLPPDESVEVWKRFTQFEQTYGDLASMLKVEQRRKEALSRTGEDGTTALESSLQDVVSRYSFMDLWPCSSRDLDHLARQEWLAKNINKKVEKSAILKGVGSTEKSASGFTTNSNPATKVFYPDTSQMVVYDPRQKPGTGALPSTTAPVLPSISGTLSNPSVPMVSSRPANPLDEILKSTPPALVAFIANLPAVEGPSPDVDVVLSICLQSNVSTG--QTGLSTQLAAGPVP---STSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDETATAQSLPLPRDVF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1590			80	20	0.995493
1606	83			16	0.994512
1607	83	16			0.994512
1608	83		16		0.994512
1611		16		83	0.994512
1612	83	16			0.994512
1615		83	16		0.994512
1616	83		16		0.994512
1617		16		83	0.994512
1621		16		83	0.994512
1622	16			83	0.994512
1625	83	16			0.994512
1626	16			83	0.994512
1831		33		66	1.0
1833		16		83	0.994512
1944		12	87		0.992554
1947	87	12			0.992554
1948	87		12		0.992554
1952		12		87	0.992554
1953			87	12	0.992554
1955			12	87	0.992554
1956		87	12		0.992554
1958	87			12	0.992554
1959	87		12		0.992554
1962		12		87	0.992554
1964	87	12			0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain